DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamts17

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_218753.6 Gene:Adamts17 / 293004 RGDID:1308783 Length:1122 Species:Rattus norvegicus


Alignment Length:756 Identity:194/756 - (25%)
Similarity:292/756 - (38%) Gaps:199/756 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 NPPQEATSSTSKK---AKKKV--YPYPR-----WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLT 213
            :||.:.|...:.|   |.:.|  .|.|.     |..||.||.|||:||.|.:::.|||.|    .
  Rat   511 DPPLDGTECGADKWCRAGECVSKTPIPEHVDGDWSPWSAWSMCSRTCGTGARFRQRKCDN----P 571

  Fly   214 NNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPYVKDDAECELNC 278
            ........|.|....:..|.::||.:..|.||..||.|: |:.....|......|.||..|||.|
  Rat   572 PPGPGGTHCQGASVEHAACENLPCPKGVPSFRDQQCQAH-DRLSSKKRGLLTAMVVDDKPCELYC 635

  Fly   279 MPFGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVS-- 341
            .|.|.:|...:.:.|:||||||.         :|..:||.|.|:.:...|.|       ||.:  
  Rat   636 SPLGKESPLLVADRVLDGTPCGP---------YETDLCVYGRCQKIGCDGII-------GSAAKE 684

  Fly   342 --CG-----GLLCRPVTGIFTRNPLPEHA----YIHVTTLPVGASNISITELKNSINLLVLRTSN 395
              ||     |..||.|.|.|:      |:    ||....:|.||..|.:.|.|.:.:.|.|:.|:
  Rat   685 DRCGVCSGDGKTCRVVKGDFS------HSRGTGYIEAVVIPAGARRIRVVEDKPAHSFLALKDSS 743

  Fly   396 ELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTG 460
            :.:| |.:..:...|.::..|.:..|.|       .|:.|..::.||....|.|||......|.|
  Rat   744 KRSI-NSDWKIELPGEFQIAGTIVRYVR-------RGLWEKFSAKGPTTVPLHLMVLLFHDQNYG 800

  Fly   461 VKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGG 525
            :.|||.:| |::|.||:                    |.....:..:|.|...|:..|:..||||
  Rat   801 IHYEYTIP-VNQSTENQ--------------------SEPAKPQDALFLWTHSGWEGCSVQCGGG 844

  Fly   526 TQTPIIRCIR--KNPLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLR 588
            .:..|:.|.|  .......:...|..:.:|  ...:..||:.||.:.|....|..|..:...|::
  Rat   845 ERRTIVSCTRIVNKTTTLVNDSDCPQASRP--EPQVRRCNSHPCQSRWVAGQWSPCSATCEKGIQ 907

  Fly   589 RREVSCVQELASGLVIHVDKAACMEDQPPMQKQCECPKNRRRNLSRYRLSGPSESSSNSSQVKRS 653
            .|||:||.:|.:|..:......|.|.:|...:.||                              
  Rat   908 HREVTCVYQLQNGTHVTTRPIYCSEPRPTPVQSCE------------------------------ 942

  Fly   654 KIDGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQRCDPSTTPESRRPCEKPACELG 718
               |.|..:||..|:|:: ||..||.|:..|||.|..|:.   :||.:|.|::...||.      
  Rat   943 ---GQDCLSIWEASEWSE-CSANCGKGIRKRTVTCTNSQG---KCDAATRPKAEEACED------ 994

  Fly   719 DWFTGPWSSCNGDCFDLTRTREVLCIRSQLITEHSECTPELKPQSVEKCSHEEVEYCAARWHYSD 783
              ::|        |::                                            |...|
  Rat   995 --YSG--------CYE--------------------------------------------WKTGD 1005

  Fly   784 WSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCA 848
            ||:|:..||.|.|.|.|:|:.   |:.. |..:.|...::...||.|:.:.|.|  |..|..:.:
  Rat  1006 WSKCSSTCGKGLQSRVVQCMH---KVTG-RHGSECPTLSKPAAYRQCHQEVCNE--KINVNTITS 1064

  Fly   849 DKFS----NC---QWA------SQAKLCSYDYYRDNCCFSC 876
            .:.:    .|   ||.      .:..||....:...||.:|
  Rat  1065 PRLAALTYKCTRDQWTVYCRVIREKSLCQDMRWYQRCCQTC 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 19/55 (35%)
ADAM_spacer1 348..468 CDD:283607 35/123 (28%)
TSP1 667..716 CDD:214559 18/48 (38%)
TSP1 779..835 CDD:214559 18/55 (33%)
PLAC 847..877 CDD:285849 8/43 (19%)
Adamts17XP_218753.6 Pep_M12B_propep 61..179 CDD:279848
AANH_like 168..>244 CDD:294206
Reprolysin 230..447 CDD:279729
ZnMc_ADAMTS_like 230..447 CDD:239801
TSP1 544..596 CDD:214559 19/55 (35%)
ADAM_spacer1 698..808 CDD:283607 35/123 (28%)
TSP_1 893..946 CDD:278517 16/85 (19%)
TSP1 950..>981 CDD:214559 13/34 (38%)
TSP1 1001..1053 CDD:214559 18/55 (33%)
PLAC 1080..1106 CDD:285849 5/26 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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