DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamts16

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_742050.2 Gene:Adamts16 / 271127 MGIID:2429637 Length:1222 Species:Mus musculus


Alignment Length:760 Identity:208/760 - (27%)
Similarity:303/760 - (39%) Gaps:181/760 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 PYP---RWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDE 239
            |.|   .|..||.||.|||:||||:.::.|.|.|.......:.    |.|..:..:|||...|..
Mouse   580 PKPTHGHWSDWSPWSPCSRTCGGGISHRDRLCTNPRPSHGGKF----CQGSTRTLKLCNSQRCPL 640

  Fly   240 QSPDFRASQCSAYNDKEFHGHRYRWEPY--VKDDAECELNCMPFGMKSFATLNESVIDGTPCGHP 302
            .|.||||:||:.||.|.|.|..|:|:||  ::|...|:|.|:..|...|.:|:..|.|||||...
Mouse   641 DSVDFRAAQCAEYNSKRFRGWLYKWKPYTQLEDQDLCKLYCIAEGFDFFFSLSNKVKDGTPCSED 705

  Fly   303 AEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGGLLCRP-----VT--GIFTRNPLP 360
            :         |.||:||.|:.|   |..:.|.:.:...|||  :|:.     ||  |:::::   
Mouse   706 S---------RNVCIDGMCERV---GCDNVLGSDATEDSCG--VCKGNNSDCVTHRGLYSKH--- 753

  Fly   361 EHA---YIHVTTLPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYH 422
             |:   |.|:.|:|.||.:|.|.|...|.:.:.:|.|.:....||..:|...|.|:..||.|:|.
Mouse   754 -HSTNQYYHMVTIPSGARSIHIYETNISTSYISVRNSLKRYYLNGHWSVDWPGRYKFSGATFNYK 817

  Fly   423 RIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLL 487
            |      |....|.:||.||..::| ::.......|.||.:|:.||                   
Mouse   818 R------SYKEPENLTSPGPTNETL-IVELLFQGRNPGVAWEFSLP------------------- 856

  Fly   488 RSGMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIR--KNPLRYYSQRRCTHS 550
            |||.:.|.::..|       ::|.::. |.|:.|||||.......|.|  |.|:   :...|...
Mouse   857 RSGAKKTPAAQPS-------YSWAIVR-SECSVSCGGGKMNSKAGCYRDLKVPV---NASFCNPK 910

  Fly   551 VKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGLVIH-----VDKAA 610
            .:||  ..|:.|...|||:.|...:|..|..:..||.:.|.|.|.:.      .|     :..:.
Mouse   911 TRPV--TGLVPCKVSPCPSSWSVGNWSVCSRTCGGGTQSRPVRCTRR------AHYRDESIPASL 967

  Fly   611 CMEDQPPMQKQC---ECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQY 672
            |.:.:||:.:.|   .||              |:                      |....|.: 
Mouse   968 CPQPEPPIHQACNSQSCP--------------PA----------------------WSTGPWAE- 995

  Fly   673 CSVTCGSGVEYRTVFCDRSKAG-------EQRCDPSTTPESRRPCEKPACELG---DWFTGPWSS 727
            ||.|||.|...|||.|..:...       :..|.....|.:...|....|...   .|....||.
Mouse   996 CSRTCGKGWRKRTVACKSTNPSARAQLLHDTACTSEPKPRTHEICLLKRCHKHKKLQWLVSAWSQ 1060

  Fly   728 CNGDCFDLTRTREVLCIRSQLITEHSECTPELKPQSVEKCSH------EEVEYCA---------- 776
            |:..|...|:.|.:.|....:..::.|.       :.:||.|      |....|.          
Mouse  1061 CSVTCQGGTQQRVLRCAEKYISGKYREL-------ASKKCLHLPKPDLELERACGLIPCPKHPPF 1118

  Fly   777 -------ARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALR--ESTHCRYTNREPIYRNCNV 832
                   ..|..|.||:||..||||.|||:|:||        ||  .::.|....:......||.
Mouse  1119 DASGSPRGSWFASPWSQCTASCGGGVQRRTVQCL--------LRGQPASDCFLHEKPETSSACNT 1175

  Fly   833 QACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYYRDNCCFSCT 877
            ..|....|...  .|.|.|..|....|..:|.:.:|...||.:|:
Mouse  1176 HFCPIAEKRGT--FCKDLFHWCYLVPQHGMCGHRFYSKQCCNTCS 1218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 20/55 (36%)
ADAM_spacer1 348..468 CDD:283607 37/129 (29%)
TSP1 667..716 CDD:214559 14/55 (25%)
TSP1 779..835 CDD:214559 21/57 (37%)
PLAC 847..877 CDD:285849 9/29 (31%)
Adamts16NP_742050.2 Pep_M12B_propep 88..187 CDD:279848
Cysteine switch. /evidence=ECO:0000250 245..253
ZnMc_ADAMTS_like 288..489 CDD:239801
Reprolysin 290..493 CDD:279729
TSP1 587..639 CDD:214559 20/55 (36%)
Spacer 745..871 43/162 (27%)
ADAM_spacer1 745..856 CDD:283607 36/121 (30%)
TSP1 927..985 CDD:214559 13/63 (21%)
TSP1 988..>1017 CDD:214559 12/29 (41%)
TSP1 1056..1113 CDD:214559 13/63 (21%)
TSP1 1126..1179 CDD:214559 21/60 (35%)
PLAC 1188..1218 CDD:285849 9/29 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11859
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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