DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Thsd4

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001035516.2 Gene:Thsd4 / 207596 MGIID:2672033 Length:1018 Species:Mus musculus


Alignment Length:938 Identity:260/938 - (27%)
Similarity:400/938 - (42%) Gaps:190/938 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RKPKTKKKISINSY------YEL---ANLWHTRKDLSSPKQKPNNKEEYLENETTSKISNKSDEK 99
            |:.:|:..|....|      |.|   .:..||.:.|.  :|:|:::....:..:.||        
Mouse   154 RRSRTRGPIGPGKYGYGKAPYILPLQTDTTHTPQRLR--RQRPSSRHSRSQEASASK-------- 208

  Fly   100 VLKSSTIISLNATNPSTSTFKSVLETTTLPSVTTKDLFESGNVATTRQTPKVEEVFSSPNPPQEA 164
                      ....|.|..|..           ::.|::|.:...:...|....::..|     .
Mouse   209 ----------QGYRPPTHQFSH-----------SQPLYQSDSGPRSGLPPSEASIYQLP-----L 247

  Fly   165 TSSTSKKAKKKVYPYPRWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRY 229
            |...|..|...::..|...          |..|...:...:...::|    :.|:.:|:|.:::|
Mouse   248 THDQSYPAASSLFHRPELS----------SHHGARPHGAAQAFPQHL----RSTAISCIGAYRQY 298

  Fly   230 QLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPY--VKDDAECELNCMPFGMKSFATLNES 292
            :|||...|.|.....|..||::||:|.|.|..|.|||:  ||.:.:|||||...|.:.:....|.
Mouse   299 KLCNTNACPESGRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQATGYRFYVRQAEK 363

  Fly   293 VIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEI--DGLYAHSGSVSCGG--LLCRPVTGI 353
            |||||||....         .|:||.|.||::.....:  |.:....|  .|||  ..|:.|:|:
Mouse   364 VIDGTPCDQNG---------TAICVSGQCKSIGCDDFLGSDKVLDKCG--VCGGDNTGCQVVSGV 417

  Fly   354 FTRNPLPEHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAV 418
            | ::.|....|..|..:|.||:.|:|||:..|.|.|.||:.:..:|.||...:...|.||..|.:
Mouse   418 F-KHALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTM 481

  Fly   419 FDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYML-------PIV------ 470
            |.|.|.:  |.|:...|...:.||..:.|.:.:..:.. |.||.|||::       |.|      
Mouse   482 FTYKRPN--EVSSTAGESFLAEGPTNEILDVYMIHQQP-NPGVHYEYVIMRNNAISPQVPPHRRP 543

  Fly   471 ---------------SESEENEMSLESSDGLLRSGMEDTSSSS------------SSRAG----- 503
                           .:.||.|.:.|..|..:.:....||.|:            |.|..     
Mouse   544 GEPFNGQLEEEDRGQEDREEREKNQEKEDSQVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPP 608

  Fly   504 ------RKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHC 562
                  |.|..|||.:|.:.|:.:||.|:|.||.||:.:|......:..|..|:||...|.  .|
Mouse   609 APQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRNTHEEVPESYCDSSMKPTPEEE--PC 671

  Fly   563 NTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELAS-GLVI------HVDK---------AAC 611
            |..||||:|...:|.||..:...|::.|:|.|.|..|: .|.:      |::|         ..|
Mouse   672 NLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKIC 736

  Fly   612 MEDQPPMQ-KQCECP---KNRRRNLSRYRLSGPS-ESSSNSSQVKRSKIDGSD---ATAIWLVSD 668
            .|.|.... ..|..|   ..|.|::......|.. .....:.:::.:.|:..|   ....|.:::
Mouse   737 SEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDMVHDEECNMKLRPNDIENCDMGPCAKSWFLTE 801

  Fly   669 WNQYCSVTCGSGVEYRTVFCDRSKAGEQRCDPSTTP----ESRRPCEKPACELG------DWFTG 723
            |::.||..||:||..|:|.|..:..       |:.|    .:.||.|...|:.|      :||||
Mouse   802 WSERCSAECGAGVRTRSVVCMTNHV-------SSLPLEGCGNNRPVEATPCDNGPCTGKVEWFTG 859

  Fly   724 PWSSCNGDCFDLTRTREVLCIRSQL----ITEHSECTPELKPQSVEKCSHEEVEYCAARWHYSDW 784
            .||.|:.:|...|:.|||:|:|...    :.:..||:...||.|.:.|   .::.|.|:|..::|
Mouse   860 SWSQCSIECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQAC---HLKPCGAKWFSTEW 921

  Fly   785 SECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCAD 849
            |.|:|.|.||.:.|.||||..|:..::|.: ...:...||    :||.|.|  ||  ||...|.|
Mouse   922 SMCSKSCQGGFRVREVRCLSDDMTPSSLCD-PQLKPEERE----SCNTQDC--VP--EVDENCKD 977

  Fly   850 KFSNCQWASQAKLCSYDYYRDNCCFSCT 877
            |:.||....||:||.|:||:..||.|||
Mouse   978 KYYNCNVVVQARLCVYNYYKTACCASCT 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 10/55 (18%)
ADAM_spacer1 348..468 CDD:283607 40/126 (32%)
TSP1 667..716 CDD:214559 15/52 (29%)
TSP1 779..835 CDD:214559 20/55 (36%)
PLAC 847..877 CDD:285849 15/29 (52%)
Thsd4NP_001035516.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..56
TSP1 57..>81 CDD:214559
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 116..240 19/116 (16%)
ADAM_spacer1 412..528 CDD:368694 40/119 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 534..623 16/88 (18%)
TSP1_ADAMTS 627..676 CDD:408800 17/50 (34%)
TSP1_ADAMTS 680..736 CDD:408800 13/55 (24%)
TSP1_ADAMTS 739..793 CDD:408800 8/53 (15%)
TSP1_ADAMTS 797..850 CDD:408800 18/59 (31%)
TSP1_ADAMTS 856..912 CDD:408800 20/58 (34%)
TSP1_ADAMTS 916..967 CDD:408800 20/55 (36%)
PLAC 975..1005 CDD:400844 15/29 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I2110
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D201044at33208
OrthoFinder 1 1.000 - - FOG0005105
OrthoInspector 1 1.000 - - otm43088
orthoMCL 1 0.900 - - OOG6_106612
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7413
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.900

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