DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and adt-3

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_508681.3 Gene:adt-3 / 180675 WormBaseID:WBGene00020567 Length:940 Species:Caenorhabditis elegans


Alignment Length:617 Identity:123/617 - (19%)
Similarity:207/617 - (33%) Gaps:244/617 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGG-----GVKYQVRKCINRNLLTNNQLTSN----ACVGYFKRYQLCNDVPC 237
            |..|:|  ..:.:|||     .::.|:|  |.|::...|..:||    .|.|...|..:|:...|
 Worm   515 WSTWND--RPAPTCGGRCSQCEIRGQIR--IMRSIRQCNNPSSNNGGAPCQGDEARGMVCHRDVC 575

  Fly   238 DEQSPDFRASQ-CSAYNDKE------FHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVID 295
            :..|.:..|:: ||...|:.      ..|...::|     .|.|::.|:..|..:..|:: :..|
 Worm   576 NGDSIENYATRVCSRLRDENAIPNTILSGEGMQFE-----QAMCKIWCLISGSTNIRTVS-NFPD 634

  Fly   296 GTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGGLLCRPVTGIFTRNPLP 360
            |.||| |.:|          |:.|.|:.                     |||             
 Worm   635 GAPCG-PGQY----------CIKGECRP---------------------LLC------------- 654

  Fly   361 EHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELA-IFNGENTVSESGSYEAVGAVFDYHRI 424
                        |::.::.:|....:::|...|:..:. :.:.:....::..|:      ::.:.
 Worm   655 ------------GSTTLAYSEADCPLSVLQTTTTPPMPHVHSVDQFAGKTNPYK------EHKKT 701

  Fly   425 DGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRS 489
            ....:.:|.:.|...:            |...:..|||..                         
 Worm   702 PFLNEWSGWSVWSECV------------TYDCHTQGVKVR------------------------- 729

  Fly   490 GMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGG----TQTPIIRCIRKNPLRYYSQRRCTHS 550
             :....:...:.|.|:|         ..||:.|.|.    |.:|        |.:.:..|    .
 Worm   730 -VRRCLAGVCAGALRER---------QPCTRPCTGSERPLTTSP--------PQQTFRNR----F 772

  Fly   551 VKPVLNE--NLLHCNTQPCPAYWRFDDWG-----ECRCSSSGGLRRREVSCV-QELASGLVIHVD 607
            :.|:.|.  |::         ..:.|.||     ...|.:...||||| :|: ||          
 Worm   773 IAPLPNRQTNMI---------LRKVDHWGPWSACSVTCGTGQKLRRRE-NCIGQE---------- 817

  Fly   608 KAACMEDQPPMQKQCECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQY 672
               |.|..|.:.:.|...||                                   .|  ::|:|:
 Worm   818 ---CAETGPCVMQSCRENKN-----------------------------------TW--TEWSQW 842

  Fly   673 --CSVTCGSGVEYR-----TVFCDRSKAGE------QRCDPSTTPESRRPCEKPACELGDWFTG- 723
              |||.||.||::|     ..|| |.|..:      |||..:||   |||....:   |.| || 
 Worm   843 SDCSVNCGEGVQFRKRACFAAFC-RGKDSDVRNCYGQRCSETTT---RRPLVNRS---GLW-TGW 899

  Fly   724 -PWSSCNGDCFDLTRTREVLCIRSQLITEHSE 754
             .||||:..|....|||...|.:...:.:.:|
 Worm   900 SSWSSCSTKCGIGQRTRRRRCYQGSCLGDDNE 931

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 17/64 (27%)
ADAM_spacer1 348..468 CDD:283607 11/120 (9%)
TSP1 667..716 CDD:214559 22/61 (36%)
TSP1 779..835 CDD:214559
PLAC 847..877 CDD:285849
adt-3NP_508681.3 ZnMc_ADAMTS_like 201..416 CDD:239801
ADAM_CR_2 434..502 CDD:375321
TSP_1 <699..751 CDD:387593 11/98 (11%)
TSP1 791..829 CDD:214559 14/51 (27%)
TSP1 836..881 CDD:214559 17/47 (36%)
TSP1 896..940 CDD:214559 13/37 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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