DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and gon-1

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001255448.1 Gene:gon-1 / 177850 WormBaseID:WBGene00001650 Length:2165 Species:Caenorhabditis elegans


Alignment Length:1039 Identity:225/1039 - (21%)
Similarity:333/1039 - (32%) Gaps:405/1039 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 RWDKWSDWSSCSRSCGGGVKYQVRKC-----------INRNLLTNNQLTSNACVGYFKRYQLCND 234
            :|..|..|..|||:|||||:..:|.|           :..|:.:..:.....|||..:||:.||.
 Worm   590 QWGDWRSWGECSRTCGGGVQKGLRDCDSPKSENEVETLKSNVTSRPRNGGKYCVGQRERYRSCNT 654

  Fly   235 VPCDEQSPDFRASQCSAYNDKEF--------HGHRYRWEP---YVKDDAECELNCMPFGMKSFAT 288
            ..|...:..:|..|||.:|:|:.        :.|   |.|   .|..:..|:|.|...|..:|..
 Worm   655 QECPWDTQPYREVQCSEFNNKDIGIQGVASTNTH---WVPKYANVAPNERCKLYCRLSGSAAFYL 716

  Fly   289 LNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGG--LLCRPVT 351
            |.:.|:|||||....:         .:||.|||.......::...........|||  ..|:.|.
 Worm   717 LRDKVVDGTPCDRNGD---------DICVAGACMPAGCDHQLHSTLRRDKCGVCGGDDSSCKVVK 772

  Fly   352 GIFTRNPLPEHAYIHVTTLPVGASNISITE-----LKNSINLLVLRTSNELAIFNGENTVSESGS 411
            |.|  |......|..|..:|.|::||.|.:     :|...|.|.||.:|...:.||...||.:..
 Worm   773 GTF--NEQGTFGYNEVMKIPAGSANIDIRQKGYNNMKEDDNYLSLRAANGEFLLNGHFQVSLARQ 835

  Fly   412 YEAV-GAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYML-------- 467
            ..|. ..|.:|      ..|:.:.|.|...||||..:.:.|.:..::...:.||||.        
 Worm   836 QIAFQDTVLEY------SGSDAIIERINGTGPIRSDIYVHVLSVGSHPPDISYEYMTAAVPNAVI 894

  Fly   468 -PIVS--------------------ESEENEMSLESS-------------------------DGL 486
             ||.|                    :..:..|.|:.|                         |..
 Worm   895 RPISSALYLWRVTDTWTECDRACRGQQSQKLMCLDMSTHRQSHDRNCQNVLKPKQATRMCNIDCS 959

  Fly   487 LRSGMEDTSSSSS---SRAGRKRIFNWKVIG---------------------------------- 514
            .|...||.||.|:   |...|:|:...|:.|                                  
 Worm   960 TRWITEDVSSCSAKCGSGQKRQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCSGRKWNY 1024

  Fly   515 -----------------------------------------------------------FSSCTK 520
                                                                       :|.|::
 Worm  1025 GEWTSCSETCGSNGKMHRKSYCVDDSNRRVDESLCGREQKEATERECNRIPCPRWVYGHWSECSR 1089

  Fly   521 SCGGGTQTPIIRCI----------RKNPLR-----------------------------YYSQRR 546
            ||.||.:....:|:          |..|.:                             .|....
 Worm  1090 SCDGGVKMRHAQCLDAADRETHTSRCGPAQTQEHCNEHACTWWQFGVWSDCSAKCGDGVQYRDAN 1154

  Fly   547 CTHSVKPVLNEN---------LLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGL 602
            ||...:.||.|:         ...|:.:.||.| :..:|.:|..|...|...|.||||    ||.
 Worm  1155 CTDRHRSVLPEHRCLKMEKIITKPCHRESCPKY-KLGEWSQCSVSCEDGWSSRRVSCV----SGN 1214

  Fly   603 VIHVDKAAC--MEDQPPMQKQCE---CPKNRRRNLSR-----------------YRLSGPSESSS 645
            ...||.:.|  ..|:|...:.|.   ||..|..:.|.                 ||     |.|.
 Worm  1215 GTEVDMSLCGTASDRPASHQTCNLGTCPFWRNTDWSACSVSCGIGHRERTTECIYR-----EQSV 1274

  Fly   646 NSSQVKRSKIDGSDAT------AIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAG----EQRCDP 700
            ::|....:|:..:..|      ..|..|.|:. ||||||||::.|:|.|.|...|    |..||.
 Worm  1275 DASFCGDTKMPETSQTCHLLPCTSWKPSHWSP-CSVTCGSGIQTRSVSCTRGSEGTIVDEYFCDR 1338

  Fly   701 STTPESRRPCEKPACE--------LGD-----WFTGPWSSCNGDCFDLT---------------- 736
            :|.|..::.|||..|:        ..|     |.||||::|:..|.:.|                
 Worm  1339 NTRPRLKKTCEKDTCDGPRVLQKLQADVPPIRWATGPWTACSATCGNGTQRRLLKCRDHVRDLPD 1403

  Fly   737 ----------------------------------------RTREVLCIRSQ----LITEHSECTP 757
                                                    ::|.|.|:.::    .|.:..:|..
 Worm  1404 EYCNHLDKEVSTRNCRLRDCSYWKMAEWEECPATCGTHVQQSRNVTCVSAEDGGRTILKDVDCDV 1468

  Fly   758 ELKPQSVEKCSHEEVEYC------AARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALREST 816
            :.:|.|...|   .:|.|      ...|...|||:|:..||||.:||||.|           .|:
 Worm  1469 QKRPTSARNC---RLEPCPKGEEHIGSWIIGDWSKCSASCGGGWRRRSVSC-----------TSS 1519

  Fly   817 HCRYTNREPIYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYYRDNCCFSCTGGI 880
            .|..|.:..::..||.:.|        .|:..:.:....|.             :|..||.||:
 Worm  1520 SCDETRKPKMFDKCNEELC--------PPLTNNSWQISPWT-------------HCSVSCGGGV 1562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 21/66 (32%)
ADAM_spacer1 348..468 CDD:283607 36/134 (27%)
TSP1 667..716 CDD:214559 23/52 (44%)
TSP1 779..835 CDD:214559 19/55 (35%)
PLAC 847..877 CDD:285849 3/29 (10%)
gon-1NP_001255448.1 Pep_M12B_propep 93..228 CDD:279848
Reprolysin 280..493 CDD:279729
ZnMc_ADAMTS_like 280..490 CDD:239801
TSP1 591..658 CDD:214559 21/66 (32%)
ADAM_spacer1 769..885 CDD:283607 34/123 (28%)
TSP1 1022..1077 CDD:214559 0/54 (0%)
TSP1 1079..1129 CDD:214559 9/49 (18%)
TSP1 1131..1185 CDD:214559 7/53 (13%)
TSP1 1190..1242 CDD:214559 17/55 (31%)
TSP1 1247..1296 CDD:214559 8/53 (15%)
TSP1 1296..1354 CDD:214559 24/58 (41%)
TSP1 1371..1424 CDD:214559 8/52 (15%)
TSP1 1493..1539 CDD:214559 20/64 (31%)
TSP1 1546..1599 CDD:214559 6/30 (20%)
TSP1 1640..1695 CDD:214559
TSP1 1697..1751 CDD:214559
TSP1 1813..1881 CDD:214559
TSP1 1886..1938 CDD:214559
GON 1942..2137 CDD:285848
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I7845
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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