DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Y8A9A.2

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_001364778.1 Gene:Y8A9A.2 / 173723 WormBaseID:WBGene00021171 Length:1358 Species:Caenorhabditis elegans


Alignment Length:1000 Identity:200/1000 - (20%)
Similarity:299/1000 - (29%) Gaps:377/1000 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EYLENETTSKISNKSDEKVLKSSTIISLNATNPST--STFKSVLETTTLPSVTTKDLFESGNVAT 144
            |.....||...|..:|....:|:|..:..:|:.||  :|.:|..|:||..:.|:.|...:.:.:|
 Worm   459 ESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTST 523

  Fly   145 TRQTPKVEEVFSSPNPPQEATSSTSKKAKKKVYPYPR---------WDKWSDWSSCSRSCGGGVK 200
            :..:...|...:|.:......::|:..:...|   ||         |.:|:..:.|:.:| |...
 Worm   524 STDSTTTESTSTSTDSTTTEVTTTASDSSTTV---PRTACCPSGGFWSEWTADAPCATTC-GSCS 584

  Fly   201 YQV--RKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHG--HR 261
            .||  |.|:       .:....||.|...:.|.||...|     .|....|.|.......|  |.
 Worm   585 QQVYRRVCL-------TEADCGACTGADVKIQNCNVGVC-----YFPLDSCCAGYTATVSGTLHI 637

  Fly   262 YRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQA 326
            ...:|.....|..:..|.|......|....||..||.||                          
 Worm   638 CGPQPTTTTPAPNDETCCPLDGIWGAWGEWSVCTGTTCG-------------------------- 676

  Fly   327 SGEIDGLYAHSGSVSCGGLLCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITELKNSINLLVL 391
                          :|||...|      ||                                  :
 Worm   677 --------------NCGGSRTR------TR----------------------------------V 687

  Fly   392 RTSNELAIFNGENTVSES----GSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRD----SLQ 448
            ..|:.....||:.|.||:    .|:                     :|| |:.|....    :.|
 Worm   688 CASDSFCSCNGDTTESENCRLLSSW---------------------SEW-TTTGTCNQTACGTCQ 730

  Fly   449 LMVFTKSANNT--------GVKYEY--MLPIVSESE-ENEMSLESSDGLLRSG----MED----- 493
            .:.:|::...|        ..|.:|  ..|..:.:. .|.::.::.||:...|    .||     
 Worm   731 TLTYTRTCLKTNGCFCMGSATKTDYCSRKPCATGTACCNSLTAQTVDGVSICGPVEAAEDETDPV 795

  Fly   494 ---TSSSSSSRAGRKRIFN-WKVIGFSSCTKSCGGGTQTPIIR-CIRKN---------------- 537
               |::.:....|  .::: |.  ...:|..:||....|.:.| |:.::                
 Worm   796 PCTTTTPACCVLG--GVWSEWS--SGDACNDTCGNCGVTTLSRVCLSQDYNCACSGSTTKQSECA 856

  Fly   538 ----PLRYYSQRRCTHSVKPVLNENLLHCNTQP--------------CPA---YWRFDDWGECRC 581
                |   :.:..|..:.|.|:......|::..              |||   ||  .:|     
 Worm   857 PAPCP---FPRTSCCGARKKVIVGRTFECSSADDSDAAPSTLCAVDCCPAAGGYW--SEW----- 911

  Fly   582 SSSGGLRRREVSCVQELASGLVIHVDKAACMEDQPPMQKQCECPKNRRRNLSRYRLSGPSES--S 644
             ::||      ||.....|...: ..|..||.   |....|:...:|..|........|.:|  :
 Worm   912 -TTGG------SCPTTCGSCSTV-TQKRVCMS---PSTCPCQGVSSRSVNCGITVCYFPDDSCCA 965

  Fly   645 SNSSQVKRSK-IDGSD--------------------ATAIWLVSDW----NQ---YC-------- 673
            ..|:.|..:: |.|..                    .|.||  |||    ||   ||        
 Worm   966 GYSATVSGTQHICGPQPNYTTPYAPYDPTCTDNCCPETGIW--SDWTSTPNQCRDYCGSCGNQTR 1028

  Fly   674 -----------------SVT--CGSGVEY--RTVFCDRSKA---GEQR-CDPSTT----PESRRP 709
                             ::|  ||:||.|  |...|....|   |.|. |.|.||    |:....
 Worm  1029 TRTCTSDADGCPCQGPTTITEPCGTGVCYFPRLSCCPGYTATVEGNQHICGPLTTAVADPDKLNT 1093

  Fly   710 CEKPAC-ELGDWFTGPW---SSCN---GDCFDLTRTREVL-----------------CIRSQLIT 750
            |....| ..|.|  |.|   |.||   |.|...||.|:.|                 |..|..:.
 Worm  1094 CGVSCCPSAGIW--GEWVSVSGCNDTCGSCGQETRKRKCLSLQYGCACTGNATDTSVCASSVCLF 1156

  Fly   751 EHSEC----------------------TPELKPQSVEKCSHEEVEYCAARWH-YSDWSECTKPCG 792
            ..:.|                      .|...|:....|..|:    ...|: :..|:.|:..||
 Worm  1157 PRTSCCTGFKKMVNITGRTFYCGPLPVVPAFNPEQTTCCDPEK----TGLWNDWGAWTTCSATCG 1217

  Fly   793 G-GTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCADKFSNCQW 856
            | |||.||..|...........:.|              ..|:||:...|.....||.||     
 Worm  1218 GCGTQTRSRTCASAPYGCPCTGDLT--------------ETQSCAKQVCTTGAQCCAGKF----- 1263

  Fly   857 ASQAKLCSYD---YYRDNCCFSCTG 878
                ....||   |.:||....|||
 Worm  1264 ----VATGYDGAQYCQDNTPEVCTG 1284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 15/57 (26%)
ADAM_spacer1 348..468 CDD:283607 19/137 (14%)
TSP1 667..716 CDD:214559 25/93 (27%)
TSP1 779..835 CDD:214559 14/57 (25%)
PLAC 847..877 CDD:285849 9/32 (28%)
Y8A9A.2NP_001364778.1 TSP1 1203..1252 CDD:214559 16/62 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I8092
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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