DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and Adamts13

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_006233941.3 Gene:Adamts13 / 102554393 RGDID:1311594 Length:1482 Species:Rattus norvegicus


Alignment Length:850 Identity:199/850 - (23%)
Similarity:306/850 - (36%) Gaps:221/850 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRA 246
            |..|...|.|||||||||..:.|.|.|    ........||||...:.::||...|::...:|.:
  Rat   449 WSSWGPHSPCSRSCGGGVITRRRWCNN----PRPAFGGRACVGEDLQAKMCNTQACEKTQLEFMS 509

  Fly   247 SQCSAYNDK------EFHGHRYRWE---PYVKDDAECELNCMPFGMKSFATLNESVIDGTPC--G 300
            .|| |..|:      :.....|.|:   .|.:.|..|...|...|.....:..:|.:|||.|  .
  Rat   510 EQC-AQTDRHPLQLSQGSASFYHWDAAVQYSQGDTLCRHMCWAVGESFIVSRGDSFLDGTRCVPN 573

  Fly   301 HPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGG--LLCRPVTGIFTRNPLPEHA 363
            .|.|     ....::|:.|:|:.....|::|..........|||  ..|....|.||.....|:.
  Rat   574 GPRE-----DGTVSLCLLGSCRTFGCDGKMDSQQVWDACQVCGGDNSTCTSQNGSFTAGRAREYV 633

  Fly   364 YIHVTTLPVGASNISITELKNSINL---LVLRTSNELAIFNGENTVSESGSYEAVGAVFDY---H 422
            ...:.|     .|::...:.|...|   |.:|..:.. |.:|::::|.:.:|.::  :.||   :
  Rat   634 TFLIVT-----PNMTSAHVINHRPLFTHLAVRIQDHY-IVSGKSSMSPNVTYPSL--LEDYRVEY 690

  Fly   423 RIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTG------VKYEY-----MLPIVSESEEN 476
            |:...||.....|.|...||:||.:::.|:.:.....|      :.:.|     ....|..::..
  Rat   691 RVTLTEDQLPRLEEIHIRGPVRDDIEIQVYRRYGGEYGGLTHPDITFTYFQRKQQAAWVWAAKRG 755

  Fly   477 EMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFN------------------------WKVIGFSS 517
            ..|:...     :|:...:.|...:|..|.:.|                        |....|..
  Rat   756 PCSVSCG-----AGLRWVTYSCQDQAQNKWVRNAQCQGSPQPPAWQEPCVSAPCPPHWVADDFGP 815

  Fly   518 CTKSCGGGTQTPIIRCIRKN----------PLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWR 572
            |:.|||||.:...:||:..:          |.|..:|:.....      ||   ||:||||..|.
  Rat   816 CSVSCGGGLRERSLRCVEAHNGFLKTLPPAPCRAVAQQPAGEV------EN---CNSQPCPTGWE 871

  Fly   573 FDDWGECRCSS-SGGLRRREVSCVQELASGLVIHVDKAA----CM-EDQPPMQKQC---ECPKNR 628
            ..|...|..|: ..||.....:||..:...     :|.|    |. :|..|:.:.|   .|... 
  Rat   872 VSDPSPCVSSACEPGLESGSGTCVPRVGDS-----EKPAMAGPCRPDDMSPVPEPCVRTTCSPG- 930

  Fly   629 RRNLSRYRLSGPSESSS----NSSQVKRSKIDGSDATAIW--LVSDWNQYCSVTCGSGVEYRTVF 687
                     |||.::.|    .||.|...| ..|.|..:|  ||.    .||::||.|::.....
  Rat   931 ---------SGPVDTMSLGEEASSPVGSGK-PSSQAEHVWTPLVG----LCSISCGKGLKELYFL 981

  Fly   688 CDRS----KAGEQRCDPSTTPESR------RPCEKPACELGDWFTGPWSSCNGDCFDLTRTREVL 742
            |..|    ...|:.|..::.|.||      |||  ||    .|.|...:.|...|........:.
  Rat   982 CMDSVLKMPVQEELCGLASKPPSRWEVCRARPC--PA----RWETRVLAPCPVTCGGGRVPLAIH 1040

  Fly   743 CIR----SQLITEHSECTPELKPQSVEKCSHE--------------------------------- 770
            |::    ..:...||:|.|..:|.|.|.||.|                                 
  Rat  1041 CVQLDHGRPVSVPHSKCWPAPRPGSFEDCSPEPCPARWKVLPLGPCSASCGLGTATQMVACVQLD 1105

  Fly   771 -----EVEY-------------------CAARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNA 811
                 ||:.                   ||.|||.|.|:||:..||.|.|||...||....::..
  Rat  1106 QGHDNEVDETFCKALVRPPASVPCLIADCAYRWHISTWTECSVSCGDGIQRRHGTCLGPQAQVPV 1170

  Fly   812 LRESTHCRYTNREPIYRNCNVQACA------EVPKTEVT----PVCADKFSNCQWASQAKLCSYD 866
              .:..|::..:....|.|....||      .:|..|.|    .:.|...::.|| ||.:..::.
  Rat  1171 --PANFCQHLPKPVTVRGCWAGPCAGQKISSSLPHKEATLPSQTLAAVTAASLQW-SQPQAQAHS 1232

  Fly   867 YYRDN 871
            .:.|:
  Rat  1233 LFPDS 1237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 21/55 (38%)
ADAMTS_spacer1 349..468 CDD:461796 28/135 (21%)
TSP1_ADAMTS 510..567 CDD:465950 18/66 (27%)
TSP1_ADAMTS 664..715 CDD:465950 19/62 (31%)
TSP1_ADAMTS 720..768 CDD:465950 12/51 (24%)
TSP1_ADAMTS 779..835 CDD:465950 17/55 (31%)
PLAC 847..877 CDD:462560 6/24 (25%)
Adamts13XP_006233941.3 ZnMc_ADAMTS_like 139..345 CDD:239801
ADAMTS_CR_2 363..433 CDD:465496
TSP1 449..501 CDD:214559 21/55 (38%)
ADAMTS_CR_3 503..617 CDD:437068 27/119 (23%)
ADAMTS_spacer1 620..741 CDD:461796 28/128 (22%)
TSP1_ADAMTS 755..804 CDD:465950 6/53 (11%)
TSP1_ADAMTS 808..866 CDD:465950 18/66 (27%)
TSP1_ADAMTS 960..1014 CDD:465950 16/57 (28%)
TSP1_ADAMTS 1018..1074 CDD:465950 15/55 (27%)
TSP1_ADAMTS 1078..1134 CDD:465950 2/55 (4%)
TSP1_ADAMTS 1138..1192 CDD:465950 17/55 (31%)
Blue background indicates that the domain is not in the aligned region.

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