DRSC/TRiP Functional Genomics Resources

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Protein Alignment loh and adamts10

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_004911053.2 Gene:adamts10 / 100494667 XenbaseID:XB-GENE-961723 Length:1139 Species:Xenopus tropicalis


Alignment Length:746 Identity:191/746 - (25%)
Similarity:293/746 - (39%) Gaps:183/746 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 PPQEAT---SSTSKKA---KKKVYPY---PR-----WDKWSDWSSCSRSCGGGVKYQVRKCINRN 210
            |..|.|   ::|.:|.   |::..|:   |.     |..||.|..|||:|||||...||.|.:  
 Frog   549 PAAEGTICQTNTIEKGWCYKRECVPFGTRPEGVDGAWGSWSSWGECSRTCGGGVSSSVRHCDS-- 611

  Fly   211 LLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPY----VKDD 271
              ....:....|:|..|||:.||...|...|.|||..||:.:::..|.|..|.|:.|    ||  
 Frog   612 --PRPTIGGKYCLGERKRYRSCNIDDCPAGSQDFREVQCAEFDNVPFRGKYYSWKSYRGGGVK-- 672

  Fly   272 AECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAH 336
             .|.|||:..|...:.....:|||||.|       |...::  :||:|.||.|.....:......
 Frog   673 -SCSLNCLAEGFNFYTERAAAVIDGTLC-------RQDSYD--ICVNGECKHVGCDRILGSDTKE 727

  Fly   337 SGSVSCG--GLLCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELAI 399
            .....||  |..|..:.|||.:: |||..|..|..:|.|:.:|.|.:|..|::.|.|:.......
 Frog   728 DKCRVCGGDGSTCETIEGIFNQS-LPEGGYEEVVWIPKGSVHIDIRQLNISLSYLALKAKEGSEY 791

  Fly   400 F-NGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKY 463
            : ||.........::..|.:|.|.|.....:|      :.::||...:|.:||..:.....|::|
 Frog   792 YINGRFPPDTPQRFDVAGTIFHYRRPQEEPES------LEALGPTNTTLIVMVAVREEILPGIRY 850

  Fly   464 EYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQT 528
            ::..||      |:::..|                         :.|.:..::.|:..|.||.|.
 Frog   851 KFNAPI------NQVTQNS-------------------------YAWYLSSWTKCSAICAGGVQL 884

  Fly   529 PIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVS 593
            ..:.|.:.:.....|...|..|.:  :.|....|||:|||..|....|.||..|.:.|:|.|.|.
 Frog   885 QQVLCKKFSDGSTVSGDLCDPSSR--IQEKQRPCNTEPCPPEWAIGAWSECSRSCNSGVRTRSVI 947

  Fly   594 CVQELASGLVIHVDKAACMEDQPPMQKQCE---CPKNRRRNLSRYRLSGPSESSSNSSQVKRSKI 655
            |.:.::......:|.|:|.:.:|.|.:.|.   ||..                            
 Frog   948 CQRRVSGTDKKSLDDASCPQPRPSMLEPCNTDTCPPE---------------------------- 984

  Fly   656 DGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQRCDPSTTPESRRPCEKPACELGDW 720
                    |:..||:: |:.:||.|..:|.|.|   |.|:|   .||.|                
 Frog   985 --------WVALDWSE-CTPSCGPGYRHRVVLC---KIGDQ---DSTLP---------------- 1018

  Fly   721 FTGPWSSCNGDCFDLTRTREVLCIRSQLITEHSECTPELKPQSVEKCSHEEVEYC-AARWHYSDW 784
                                           ||.|..:.||.:..:|:   ::.| .:||...:|
 Frog  1019 -------------------------------HSHCQAKDKPATTMRCT---LQRCPPSRWITGEW 1049

  Fly   785 SECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCAD 849
            .||:..||.|.|||||:||.:     ..:.|..|..:.|....:.|..:..|:  .::....|.|
 Frog  1050 GECSANCGLGQQRRSVQCLSH-----IGQPSIECTESFRPSAMQQCENKCLAD--PSDSPDECKD 1107

  Fly   850 --KFSNCQWASQAKLCSYDYYRDNCCFSCTG 878
              |.:.|....:.|.||..|:|..||.:|.|
 Frog  1108 VNKVAYCPLVLKFKFCSRPYFRQMCCKTCQG 1138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 22/55 (40%)
ADAMTS_spacer1 349..468 CDD:461796 30/119 (25%)
TSP1_ADAMTS 510..567 CDD:465950 14/56 (25%)
TSP1_ADAMTS 664..715 CDD:465950 16/50 (32%)
TSP1_ADAMTS 720..768 CDD:465950 5/47 (11%)
TSP1_ADAMTS 779..835 CDD:465950 18/55 (33%)
PLAC 847..877 CDD:462560 11/31 (35%)
adamts10XP_004911053.2 Pep_M12B_propep 97..217 CDD:460254
ZnMc_ADAMTS_like 276..489 CDD:239801
ADAMTS_CR_2 504..572 CDD:465496 6/22 (27%)
TSP1 585..637 CDD:214559 22/55 (40%)
ADAMTS_CR_3 642..740 CDD:437068 33/109 (30%)
ADAMTS_spacer1 742..855 CDD:461796 30/119 (25%)
TSP1_ADAMTS 866..921 CDD:465950 14/56 (25%)
TSP1_ADAMTS 925..981 CDD:465950 16/55 (29%)
TSP1_ADAMTS 985..1039 CDD:465950 22/110 (20%)
TSP1_ADAMTS 1044..1093 CDD:465950 18/53 (34%)
PLAC 1105..1137 CDD:462560 11/31 (35%)
Blue background indicates that the domain is not in the aligned region.

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