DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and adamtsl3

DIOPT Version :9

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_012814972.2 Gene:adamtsl3 / 100493011 XenbaseID:XB-GENE-923351 Length:1777 Species:Xenopus tropicalis


Alignment Length:786 Identity:197/786 - (25%)
Similarity:300/786 - (38%) Gaps:223/786 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRA 246
            ||.|..||.|||:||||..|.:|:|:|          ..:|.|...||:.|::..|.....||||
 Frog    89 WDAWGTWSDCSRTCGGGASYSLRRCLN----------GRSCEGRNIRYKTCSNNDCPSDVGDFRA 143

  Fly   247 SQCSAYNDKEFHGHRYRWEPYVKD-DAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQF 310
            .||||:||.::.|..|.|:|...| .|.|.|.|...|......|...|:|||.|...:.      
 Frog   144 QQCSAHNDVKYQGQYYEWQPVYNDASAPCALKCQAVGKNLVVELAPKVLDGTRCNTDSP------ 202

  Fly   311 WERAVCVDGACKAVQASGEIDGLYAHSGSVSCG-----GLLCRPVTGIFTRNPL-PEHAYIHVTT 369
               .:|:.|.|:||....:   |.:::...:||     |..||.|.| .||:.| ||.....:..
 Frog   203 ---DMCISGICQAVGCDRQ---LGSNAKEDNCGVCAGDGSTCRLVRG-QTRSHLSPEKREETIIA 260

  Fly   370 LPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVT 434
            :|.|:.::.|| :|...::.:  .|..|...:||::.:..|||.......::.|  |:|     .
 Frog   261 VPHGSRSVRIT-VKGPAHVFI--ESKTLQGESGEHSFTSPGSYVIENTTVEFQR--GSE-----R 315

  Fly   435 EWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSS 499
            |.:...||:|....:.:...:..::.|::.:..||..:                           
 Frog   316 EILKIPGPLRADFIIKIKYAAPKDSIVQFYFYQPISHQ--------------------------- 353

  Fly   500 SRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRC--IRKNP------LRYYSQRRCTHSVKPVLN 556
                      |:...|..||.:||||.|.....|  ||.|.      ..||.:.:   ..||.|.
 Frog   354 ----------WRQTDFFPCTVTCGGGYQLNSAECVDIRLNRTVNDHYCHYYPENK---KPKPKLK 405

  Fly   557 ENLLHCNTQPCPA-----------------YWRFDDWGECRCSSSGGLRRREVSCVQELASGLVI 604
            |    ||.:|||:                 .|..:.|..|..|..||::||.:.||:|...|.::
 Frog   406 E----CNMEPCPSSDGFKEIMPYDHFQPLPRWEHNPWTACSVSCGGGIQRRSIVCVEETMHGEIL 466

  Fly   605 HVDKAACM-EDQPPMQKQC---ECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWL 665
            .|::..|| ..:|.:.:.|   :|||                                     |:
 Frog   467 QVEEWKCMYAPKPTIMQTCNLFDCPK-------------------------------------WM 494

  Fly   666 VSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQR--CDPSTTPESRR------PCEKP--------- 713
            ..:|:| |:||||.|:.||.|.|:..: |:..  |:|...|..:.      ||.||         
 Frog   495 AMEWSQ-CTVTCGRGLRYRVVLCNDHR-GQHTGGCNPQLKPHIKEECVVPVPCFKPRERFPVEAK 557

  Fly   714 ------ACELGDWFTG---------PWSSCNGDCFDLTRTREVLC------IRSQLITEHSECTP 757
                  |.||.:..|.         .||.|:..|....:.|:|.|      .:::|.....||..
 Frog   558 HPWLKQAQELEETKTASDEPTFIPEAWSPCSVSCGRGMQVRQVKCRILLSFTQTELELPDEECEE 622

  Fly   758 ELKPQSVEKC--------------SH--EEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYD 806
            | ||.:...|              .|  .::|.....|.|..::.|:..|.||.|.....||...
 Frog   623 E-KPDTERACYLLPCEGDPGTQTSEHLPHDIESPLYDWEYIGFTSCSSSCSGGRQEAIAVCLNMQ 686

  Fly   807 IKMNALRESTHCRYTNREP-IYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYY-R 869
            .|.:.  .::.|..:.|.| :.|.||            |.:|..:::...|:..:..|..... |
 Frog   687 TKQSV--NNSLCDSSVRPPAMTRACN------------TKLCPPRWNTGSWSRCSATCGVGIQTR 737

  Fly   870 DNCCFS 875
            |..|.|
 Frog   738 DVYCSS 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 21/55 (38%)
ADAM_spacer1 348..468 CDD:283607 28/120 (23%)
TSP1 667..716 CDD:214559 21/71 (30%)
TSP1 779..835 CDD:214559 16/56 (29%)
PLAC 847..877 CDD:285849 7/30 (23%)
adamtsl3XP_012814972.2 TSP1 89..135 CDD:214559 21/55 (38%)
TSP1_ADAMTS 354..412 CDD:408800 21/64 (33%)
TSP1_ADAMTS 433..490 CDD:408800 17/56 (30%)
TSP1_ADAMTS 493..545 CDD:408800 17/53 (32%)
TSP1_ADAMTS 579..636 CDD:408800 14/57 (25%)
TSP1_ADAMTS 718..771 CDD:408800 6/26 (23%)
TSP1_ADAMTS 775..831 CDD:408800
TSP1_ADAMTS 837..892 CDD:408800
Ig 943..999 CDD:416386
Ig strand C 955..960 CDD:409353
Ig strand C' 962..965 CDD:409353
Ig strand D 970..974 CDD:409353
Ig strand E 977..983 CDD:409353
Ig strand F 990..998 CDD:409353
Ig 1216..1285 CDD:416386
Ig strand B 1216..1225 CDD:409353
Ig strand C 1231..1235 CDD:409353
Ig strand C' 1238..1240 CDD:409353
Ig strand D 1248..1252 CDD:409353
Ig strand E 1253..1258 CDD:409353
Ig strand F 1266..1274 CDD:409353
Ig 1318..1382 CDD:416386
Ig strand B 1322..1329 CDD:409353
Ig strand C 1337..1341 CDD:409353
Ig strand D 1353..1356 CDD:409353
Ig strand E 1357..1362 CDD:409353
Ig strand F 1370..1378 CDD:409353
Ig_3 1416..1489 CDD:404760
Ig strand C 1443..1447 CDD:409353
Ig strand E 1468..1472 CDD:409353
Ig strand F 1482..1487 CDD:409353
TSP1_ADAMTS 1508..1562 CDD:408800
TSP1_ADAMTS 1566..1623 CDD:408800
TSP1_ADAMTS 1626..1682 CDD:408800
TSP1_ADAMTS 1686..1740 CDD:408800
PLAC 1745..1774 CDD:400844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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