DRSC/TRiP Functional Genomics Resources

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Protein Alignment loh and adamtsl3

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_012814972.2 Gene:adamtsl3 / 100493011 XenbaseID:XB-GENE-923351 Length:1777 Species:Xenopus tropicalis


Alignment Length:786 Identity:197/786 - (25%)
Similarity:300/786 - (38%) Gaps:223/786 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 WDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRA 246
            ||.|..||.|||:||||..|.:|:|:|          ..:|.|...||:.|::..|.....||||
 Frog    89 WDAWGTWSDCSRTCGGGASYSLRRCLN----------GRSCEGRNIRYKTCSNNDCPSDVGDFRA 143

  Fly   247 SQCSAYNDKEFHGHRYRWEPYVKD-DAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQF 310
            .||||:||.::.|..|.|:|...| .|.|.|.|...|......|...|:|||.|...:.      
 Frog   144 QQCSAHNDVKYQGQYYEWQPVYNDASAPCALKCQAVGKNLVVELAPKVLDGTRCNTDSP------ 202

  Fly   311 WERAVCVDGACKAVQASGEIDGLYAHSGSVSCG-----GLLCRPVTGIFTRNPL-PEHAYIHVTT 369
               .:|:.|.|:||....:   |.:::...:||     |..||.|.| .||:.| ||.....:..
 Frog   203 ---DMCISGICQAVGCDRQ---LGSNAKEDNCGVCAGDGSTCRLVRG-QTRSHLSPEKREETIIA 260

  Fly   370 LPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVT 434
            :|.|:.::.|| :|...::.:  .|..|...:||::.:..|||.......::.|  |:|     .
 Frog   261 VPHGSRSVRIT-VKGPAHVFI--ESKTLQGESGEHSFTSPGSYVIENTTVEFQR--GSE-----R 315

  Fly   435 EWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSS 499
            |.:...||:|....:.:...:..::.|::.:..||..:                           
 Frog   316 EILKIPGPLRADFIIKIKYAAPKDSIVQFYFYQPISHQ--------------------------- 353

  Fly   500 SRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRC--IRKNP------LRYYSQRRCTHSVKPVLN 556
                      |:...|..||.:||||.|.....|  ||.|.      ..||.:.:   ..||.|.
 Frog   354 ----------WRQTDFFPCTVTCGGGYQLNSAECVDIRLNRTVNDHYCHYYPENK---KPKPKLK 405

  Fly   557 ENLLHCNTQPCPA-----------------YWRFDDWGECRCSSSGGLRRREVSCVQELASGLVI 604
            |    ||.:|||:                 .|..:.|..|..|..||::||.:.||:|...|.::
 Frog   406 E----CNMEPCPSSDGFKEIMPYDHFQPLPRWEHNPWTACSVSCGGGIQRRSIVCVEETMHGEIL 466

  Fly   605 HVDKAACM-EDQPPMQKQC---ECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWL 665
            .|::..|| ..:|.:.:.|   :|||                                     |:
 Frog   467 QVEEWKCMYAPKPTIMQTCNLFDCPK-------------------------------------WM 494

  Fly   666 VSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQR--CDPSTTPESRR------PCEKP--------- 713
            ..:|:| |:||||.|:.||.|.|:..: |:..  |:|...|..:.      ||.||         
 Frog   495 AMEWSQ-CTVTCGRGLRYRVVLCNDHR-GQHTGGCNPQLKPHIKEECVVPVPCFKPRERFPVEAK 557

  Fly   714 ------ACELGDWFTG---------PWSSCNGDCFDLTRTREVLC------IRSQLITEHSECTP 757
                  |.||.:..|.         .||.|:..|....:.|:|.|      .:::|.....||..
 Frog   558 HPWLKQAQELEETKTASDEPTFIPEAWSPCSVSCGRGMQVRQVKCRILLSFTQTELELPDEECEE 622

  Fly   758 ELKPQSVEKC--------------SH--EEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYD 806
            | ||.:...|              .|  .::|.....|.|..::.|:..|.||.|.....||...
 Frog   623 E-KPDTERACYLLPCEGDPGTQTSEHLPHDIESPLYDWEYIGFTSCSSSCSGGRQEAIAVCLNMQ 686

  Fly   807 IKMNALRESTHCRYTNREP-IYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYY-R 869
            .|.:.  .::.|..:.|.| :.|.||            |.:|..:::...|:..:..|..... |
 Frog   687 TKQSV--NNSLCDSSVRPPAMTRACN------------TKLCPPRWNTGSWSRCSATCGVGIQTR 737

  Fly   870 DNCCFS 875
            |..|.|
 Frog   738 DVYCSS 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 21/55 (38%)
ADAMTS_spacer1 349..468 CDD:461796 27/119 (23%)
TSP1_ADAMTS 510..567 CDD:465950 21/64 (33%)
TSP1_ADAMTS 664..715 CDD:465950 21/73 (29%)
TSP1_ADAMTS 720..768 CDD:465950 15/76 (20%)
TSP1_ADAMTS 779..835 CDD:465950 16/56 (29%)
PLAC 847..877 CDD:462560 7/30 (23%)
adamtsl3XP_012814972.2 TSP1 89..135 CDD:214559 21/55 (38%)
ADAMTS_CR_3 140..238 CDD:437068 35/109 (32%)
ADAMTS_spacer1 257..349 CDD:461796 20/101 (20%)
TSP1_ADAMTS 354..412 CDD:465950 21/64 (33%)
TSP1_ADAMTS 433..490 CDD:465950 17/56 (30%)
TSP1_ADAMTS 493..545 CDD:465950 17/53 (32%)
TSP1_ADAMTS 584..636 CDD:465950 14/52 (27%)
TSP1_ADAMTS 718..771 CDD:465950 6/26 (23%)
TSP1_ADAMTS 775..831 CDD:465950
TSP1_ADAMTS 837..892 CDD:465950
Ig 943..999 CDD:472250
Ig strand B 943..946 CDD:409353
Ig strand C 955..959 CDD:409353
Ig strand E 977..981 CDD:409353
Ig strand F 991..996 CDD:409353
Ig 1216..1285 CDD:472250
Ig strand B 1218..1222 CDD:143259
Ig strand C 1231..1235 CDD:143259
Ig strand E 1253..1257 CDD:143259
Ig strand F 1267..1272 CDD:143259
Ig strand G 1280..1283 CDD:143259
Ig 1318..1382 CDD:472250
Ig strand B 1324..1328 CDD:409353
Ig strand C 1337..1341 CDD:409353
Ig strand E 1357..1361 CDD:409353
Ig strand F 1371..1376 CDD:409353
Ig_3 1416..1489 CDD:464046
TSP1_ADAMTS 1508..1562 CDD:465950
TSP1_ADAMTS 1566..1623 CDD:465950
TSP1_ADAMTS 1626..1682 CDD:465950
TSP1_ADAMTS 1686..1740 CDD:465950
PLAC 1745..1774 CDD:462560
Blue background indicates that the domain is not in the aligned region.

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