DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and adamtsl4

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_021322467.2 Gene:adamtsl4 / 100333903 ZFINID:ZDB-GENE-070815-2 Length:1089 Species:Danio rerio


Alignment Length:971 Identity:255/971 - (26%)
Similarity:382/971 - (39%) Gaps:219/971 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HRKPKTKKKISINSYYELANLWHTRKDLSSPKQKPNNKEEYLENETTSKISNKSDEKVLKSSTII 107
            :|.|.:.::.|  |........:.|...|.|..:.|....:..:.|::.                
Zfish   193 NRDPASVRRSS--SSIRPGQFGYGRVPFSLPLHRQNRHARHTHHNTSTD---------------- 239

  Fly   108 SLNATNPSTSTF-KSVLETTTLPSVT-------------------------TKDLFESGNVATTR 146
            ||:|.|.::|:. :...|.|....|:                         .:|....|.  |:|
Zfish   240 SLDALNVNSSSHGEKTHEKTPADKVSEDNDDGEQRRRVRIPHIRPPAQRNGARDRRIEGR--TSR 302

  Fly   147 QTP-----KVEEVFSSPNPPQEATSSTSKKAKKKVYPYPRWDKWS---------DWSSCSRSCGG 197
            |.|     .:....:|.:||.....:.|.         |..:.|:         ||         
Zfish   303 QAPPSYTRTISRTHTSRDPPPYGPQTPSN---------PNPEPWAPVQTPGNEQDW--------- 349

  Fly   198 GVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRY 262
                       |..:..|.    .|.|..:.|:.|:...|...:.:.||.||||:|.:||.|..|
Zfish   350 -----------RPPVAGNY----RCSGRDREYRRCSLQACPGAAVNSRADQCSAFNAQEFMGRVY 399

  Fly   263 RWEPY--VKDDAECELNCMPFGMKSFATLNESVIDGTPCGH--PAEYFRSQFWERAVCVDGACKA 323
            .|||:  |..:.:|||.|.|.|.:.:....|.|.|||||.:  |.:          |||.|.|.:
Zfish   400 DWEPFTEVGLEQQCELTCRPVGYRFYVRQAERVRDGTPCANNTPTD----------VCVGGRCLS 454

  Fly   324 VQASGEI-DGLYAHSGSVSCGGL--LCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITELKNS 385
            ....|.: .||......| |||.  .|..|:|.|....:| ..|..:..:|.||:.|:|||.:.|
Zfish   455 EGCDGVLGSGLVRDRCGV-CGGEDGTCERVSGSFMNTSVP-LGYHKILDIPPGATAINITERRAS 517

  Fly   386 INLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHR--IDGAEDSNGVTEWITSIGPIRDSLQ 448
            .|.|.||:....::.||...|...|.|:|.||.|.|.|  .:..|......|.:|:.||....||
Zfish   518 PNYLALRSGTGQSVVNGRWAVDPPGEYQAGGAAFLYTRPKAEPQEPGEDRGETLTAAGPTTALLQ 582

  Fly   449 L-MVFTKSANNTGVKYEYMLP----------IVSESEENEMSLESSDGL------------LRSG 490
            | ::|.:  .|.|:.|||.:|          ::.|.|....:|..:.|:            :.|.
Zfish   583 LYIIFHR--QNPGIDYEYYIPVDKRRDGETEVLRERERGRSALRETTGVSMAVENPVAPPPVSSS 645

  Fly   491 MEDTSSSSSSRAGR---KR--------------------------IFNWKVIGFSSCTKSCGGGT 526
            ...:||||||.:.|   :|                          :|.|:....:.||.:||.|:
Zfish   646 FPSSSSSSSSSSDRWPPERPRPQGLGPNRNARIPPRTDLPLDNLPVFVWRRGALTECTATCGKGS 710

  Fly   527 QTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRRE 591
            |...|.|:.::..:...:|||..:.||...|.  .||..|||.:|....|.||..|...|:::|:
Zfish   711 QYREIVCVNRHTEQEVHERRCDSATKPTPEEE--PCNVHPCPPFWDMGAWSECSVSCGWGVQQRQ 773

  Fly   592 VSCVQELAS-GLVIHVDKAACME----DQPPMQKQC--------------ECPKNRR-RNLSRYR 636
            :.|.|...: ..::|..:.|.:.    .||...:.|              :|...:| ||:....
Zfish   774 IQCRQSFGNRSTMVHPQRCAGLSRPNATQPCHPRVCSHWEISTNWSTCSVDCGMGKRTRNVRCVS 838

  Fly   637 LSGPSESSSNSSQVKRSKIDGSD-----ATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQ 696
            ..|.:.:....:...|.: ...|     ....|..:||...||..||.||:.|.|.| .|..|.:
Zfish   839 NHGNTVNDRECNDRLRPQ-HSEDCHMGPCVTNWYFTDWTHTCSAECGPGVQRREVVC-VSAGGRR 901

  Fly   697 RCDPSTTPESRRPCEKPACELGD------WFTGPWSSCNGDCFDLTRTREVLCIRSQ----LITE 751
            ..|........:|.:..||..|.      |:||||..||..|.:.|:.|:|:|:|..    .::.
Zfish   902 EGDGGLECVGDKPADMKACNGGPCTATYLWYTGPWGYCNAVCGNGTQRRDVICVRKSGSEFTVSS 966

  Fly   752 HSECTPELKPQSVEKCSHEEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALREST 816
            .|:|:...||..|:.|   |::.|..:|..:|||.|::.||.|.|.|.||||..|     .:.|.
Zfish   967 SSDCSHLEKPSPVQPC---ELQPCTPQWFTTDWSTCSRSCGEGLQTREVRCLTPD-----KQHSA 1023

  Fly   817 HCRYTNREPIYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYYRDNCCFSCT 877
            .|....|....:.||...|:......    |.|:..||....||:||.|.||:..||.|||
Zfish  1024 TCHPDARPAHQQPCNTIPCSPFEDEN----CKDRRHNCVMVVQARLCVYSYYKTACCASCT 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 9/64 (14%)
ADAMTS_spacer1 349..468 CDD:461796 42/121 (35%)
TSP1_ADAMTS 510..567 CDD:465950 17/56 (30%)
TSP1_ADAMTS 664..715 CDD:465950 16/50 (32%)
TSP1_ADAMTS 720..768 CDD:465950 18/51 (35%)
TSP1_ADAMTS 779..835 CDD:465950 20/55 (36%)
PLAC 847..877 CDD:462560 14/29 (48%)
adamtsl4XP_021322467.2 None

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