DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loh and adamts18

DIOPT Version :10

Sequence 1:NP_609406.2 Gene:loh / 34435 FlyBaseID:FBgn0032252 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_009301678.1 Gene:adamts18 / 100150128 ZFINID:ZDB-GENE-070815-1 Length:1244 Species:Danio rerio


Alignment Length:753 Identity:208/753 - (27%)
Similarity:302/753 - (40%) Gaps:165/753 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 RWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFR 245
            :|..||:||.|||:|||||.|:.|.|.:.:...|.:.    |.|..:.:||||..||.....|||
Zfish   597 QWSGWSEWSDCSRTCGGGVMYRERSCNSPSPQHNGKF----CQGPGRLHQLCNTKPCQPDGVDFR 657

  Fly   246 ASQCSAYNDKEFHGHRYRWEPYVKDDAE--CELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRS 308
            |.||:.||.|.|.|..|:|:||.|.:.|  |:|.|:......|..::..|.|||.|..       
Zfish   658 AQQCAEYNSKPFRGWYYKWKPYTKVEEEDICKLYCIAEDFDFFFAMSSKVKDGTSCSD------- 715

  Fly   309 QFWERAVCVDGACKAV---QASGEIDGLYAHSGSVSCG-----GLLCRPVTGIFTRNPLPEHA-- 363
              ::..||:||.|:.|   |..|....|.|      ||     ...|:..:|.:|   |...|  
Zfish   716 --YKGGVCIDGICEPVGCDQVLGSKAALDA------CGVCKGDNSTCKFYSGQYT---LQHRANE 769

  Fly   364 YIHVTTLPVGASNISITELKNSINLLVLRTSNELAIF-NGENTVSESGSYEAVGAVFDYHRIDGA 427
            |..|..:|.||.:|.:.|::.|.:.|.:|:......: ..:.||...|.::..|..|:|.|    
Zfish   770 YYPVVMVPAGARSIQVQEMEISNSYLAVRSLKRGTYYLTADWTVDWPGRFQFAGTTFNYQR---- 830

  Fly   428 EDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGME 492
              |....|.:.:.||..::| |........|.|:.:||.||                        
Zfish   831 --SFNRPETLFATGPTNETL-LFEILLQGKNPGITWEYTLP------------------------ 868

  Fly   493 DTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNE 557
                    ...:|..:.|.|:. |.|:..|.||..:....|::....:..|. .|....:||:..
Zfish   869 --------HPEKKHNYTWSVVR-SDCSAPCAGGRVSTKAICLQDQQTQVNSS-LCNPQTRPVVGS 923

  Fly   558 NLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGLVIHVDKAACMEDQPPMQKQC 622
            :|  ||||||||||....||.|..:..||.:.|.:.|::::.........::.|....|...:.|
Zfish   924 HL--CNTQPCPAYWTTGKWGVCSRTCGGGQQTRNIRCLRKVTYQREEVAAQSLCPVMAPAQLQPC 986

  Fly   623 ---ECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTCGSGVEYR 684
               .||..                                    |..|.|.| ||.|||.|::.|
Zfish   987 NTQSCPPE------------------------------------WSTSSWTQ-CSKTCGRGLKKR 1014

  Fly   685 TVFCDRSKAG-------EQRCDPSTTPESRRPCEKPAC---ELGDWFTGPWSSCNGDCFDLTRTR 739
            :|||..:..|       :..|.....|:::..|....|   |...|.|..|..|:..|....|.|
Zfish  1015 SVFCRSTDPGARAVVVPDSMCKLHLKPKAQESCVLSRCPKNERLQWITSAWGECSASCGAGVRRR 1079

  Fly   740 EVLCIRSQLITEHSE-----CTPELKPQS--VEKCSHEEV-EYCAAR------------WHYSDW 784
            |:.|........::|     |....||::  .:.|::... |..|.:            |:.|.|
Zfish  1080 ELHCGEKDSQGGYTEFPARRCRNLQKPEADLEQSCNNGPCPEPLAPQLLQPGGPSVTLGWYSSPW 1144

  Fly   785 SECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPI-YRNCNVQAC---AEVPKTEVTP 845
            .:||..||||.|.|||:||...      |.|..| :.::.|| .|.||...|   ..||....:|
Zfish  1145 LQCTVSCGGGVQTRSVQCLRQG------RPSVGC-FPHQRPISSRACNTHFCPAPIPVPVPPPSP 1202

  Fly   846 V------CADKFSNCQWASQAKLCSYDYYRDNCCFSCT 877
            .      |.|.||.|....|..:|::.:|...||.||:
Zfish  1203 TLKEDQPCIDFFSWCHLVPQHGVCNHKFYGQQCCKSCS 1240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lohNP_609406.2 TSP1 182..238 CDD:214559 24/55 (44%)
ADAMTS_spacer1 349..468 CDD:461796 31/121 (26%)
TSP1_ADAMTS 510..567 CDD:465950 17/56 (30%)
TSP1_ADAMTS 664..715 CDD:465950 18/57 (32%)
TSP1_ADAMTS 720..768 CDD:465950 13/54 (24%)
TSP1_ADAMTS 779..835 CDD:465950 23/56 (41%)
PLAC 847..877 CDD:462560 11/29 (38%)
adamts18XP_009301678.1 Pep_M12B_propep 68..207 CDD:460254
ZnMc_ADAMTS_like 299..500 CDD:239801
ADAMTS_CR_2 517..584 CDD:465496
TSP1 598..649 CDD:214559 23/54 (43%)
ADAMTS_CR_3 654..754 CDD:437068 38/114 (33%)
ADAMTS_spacer1 756..868 CDD:461796 31/121 (26%)
TSP1_ADAMTS 883..931 CDD:465950 15/50 (30%)
TSP1_ADAMTS 935..991 CDD:465950 11/55 (20%)
TSP1_ADAMTS 995..1052 CDD:465950 18/57 (32%)
TSP1_ADAMTS 1060..1119 CDD:465950 14/58 (24%)
TSP1_ADAMTS 1139..1189 CDD:465950 23/56 (41%)
PLAC 1210..1240 CDD:462560 11/29 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.