DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nse4 and nsmce4a

DIOPT Version :9

Sequence 1:NP_001162938.1 Gene:Nse4 / 34434 FlyBaseID:FBgn0032251 Length:290 Species:Drosophila melanogaster
Sequence 2:XP_002939569.1 Gene:nsmce4a / 100495761 XenbaseID:XB-GENE-6046750 Length:333 Species:Xenopus tropicalis


Alignment Length:322 Identity:77/322 - (23%)
Similarity:136/322 - (42%) Gaps:72/322 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DDQDARILRLQ--NLIEKNIEIEQQIENNTIGESITAIEEIIQTANDISKGHEDRRTNSTELVLD 73
            ||...|.:|.|  :|| :|:   ||.....:......:.|.::.||.|..|....|    |..||
 Frog    30 DDLSRRQIRQQYWDLI-RNV---QQNREEMLSSRTDKLTEALEEANKIFAGVSRAR----EAALD 86

  Fly    74 TELLRRNFEVVG------KAIQHNTNVT-----------------DRMVATAINDLVFKESEED- 114
            .:||     |:.      ||.|.:|::|                 :||.:...|    .|::.| 
 Frog    87 AQLL-----VLASSLGKEKASQLHTDMTVFDPTSFAEDLLSFMGLNRMESPGNN----SENDSDD 142

  Fly   115 ------------WDALCSLAIQFGRPLFTNDSMLPFIDVTPKVVVQKQRAPRKTKSQVDEKRPEK 167
                        |..|.|.|.:..:...|...||......|   |.:||..|:.:....|::...
 Frog   143 EGYARGYLPADAWQKLGSEAEKHFKRTPTFHYMLGSFKTEP---VVRQRIERQKRCNKPEEKSVM 204

  Fly   168 SDQLERKDEGAASVTHMLKQIRQI-------YRDGNQEPIPYFKLICNPNNFMDTVQNALQLSFL 225
            ..||::.:|.....|.  |::.:|       :||..:.||.:|..:.:||:|..||:|...:||:
 Frog   205 PAQLKKMEESHQEATE--KEVERILGFLQTYFRDDPETPISFFDFVIDPNSFARTVENIFHVSFI 267

  Fly   226 VKENYISIENGEDGLPLVRVV---NSKSVE-GNAPS-QAICSIDVTFCEKMVKHYNLHEPML 282
            :::.:..|:...|.||::..:   |..::: .|.|. |.:.|:.....:::|:.:.:.|||:
 Frog   268 IRDGFARIKLDHDKLPVIEPIAQENESNIDKDNQPRYQGVISLSHQDWKEIVETFEITEPMI 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nse4NP_001162938.1 Nse4_C 200..282 CDD:285900 22/86 (26%)
nsmce4aXP_002939569.1 Nse4-Nse3_bdg 86..138 CDD:373830 12/60 (20%)
Nse4_C 242..330 CDD:370095 23/88 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11776
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 61 1.000 Inparanoid score I5219
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D465236at33208
OrthoFinder 1 1.000 - - FOG0002403
OrthoInspector 1 1.000 - - oto103898
Panther 1 1.100 - - LDO PTHR16140
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R844
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.100

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