| Sequence 1: | NP_477441.1 | Gene: | STUB1 / 34433 | FlyBaseID: | FBgn0027052 | Length: | 289 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_017450271.1 | Gene: | Rpap3 / 300189 | RGDID: | 1303036 | Length: | 673 | Species: | Rattus norvegicus |
| Alignment Length: | 280 | Identity: | 78/280 - (27%) |
|---|---|---|---|
| Similarity: | 118/280 - (42%) | Gaps: | 45/280 - (16%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 15 LQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATYFTNRALCNLKLKRWELCCQDSRRALDIDG 79
Fly 80 NLLKGHF------FLGQGL------------MEIDNFDEAIKHLQRAYDLSKEQKQNFGDDITLQ 126
Fly 127 LRLARKKRWNVMEEKRIQQEIELQSYLNGLIK-GDMESRL-----------ANLKLNGNVHDEQL 179
Fly 180 K-DKQQEIEQECDDHIKELNNIFSKVDERRKKREVPDFLCGKIS-----FE--ILTDPVITPSGI 236
Fly 237 TYERKDIEEHLQRVGHFDPV 256 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| STUB1 | NP_477441.1 | TPR repeat | 17..42 | CDD:276809 | 14/24 (58%) |
| TPR | 21..>111 | CDD:440225 | 32/107 (30%) | ||
| TPR repeat | 47..77 | CDD:276809 | 9/29 (31%) | ||
| TPR repeat | 82..110 | CDD:276809 | 11/45 (24%) | ||
| CHIP_TPR_N | 130..211 | CDD:436460 | 24/93 (26%) | ||
| RING-Ubox_CHIP | 213..283 | CDD:438316 | 16/51 (31%) | ||
| Rpap3 | XP_017450271.1 | TPR | 140..>366 | CDD:440225 | 59/219 (27%) |
| TPR repeat | 147..175 | CDD:276809 | 15/26 (58%) | ||
| TPR repeat | 180..210 | CDD:276809 | 9/29 (31%) | ||
| TPR repeat | 215..243 | CDD:276809 | 4/27 (15%) | ||
| Spy | 286..>419 | CDD:443119 | 36/138 (26%) | ||
| TPR repeat | 296..324 | CDD:276809 | 6/27 (22%) | ||
| TPR repeat | 329..359 | CDD:276809 | 10/30 (33%) | ||
| TPR repeat | 364..391 | CDD:276809 | 11/29 (38%) | ||
| RPAP3_C | 553..643 | CDD:464012 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||