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Protein Alignment STUB1 and Stub1

DIOPT Version :10

Sequence 1:	NP_477441.1	Gene:	STUB1 / 34433	FlyBaseID:	FBgn0027052	Length:	289	Species:	Drosophila melanogaster
Sequence 2:	NP_001020796.2	Gene:	Stub1 / 287155	RGDID:	1306167	Length:	304	Species:	Rattus norvegicus

Alignment Length:	276	Identity:	161/276 - (58%)
Similarity:	210/276 - (76%)	Gaps:	2/276 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    16 QLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATYFTNRALCNLKLKRWELCCQDSRRALDIDGN 80
            :||||||.||..|||.:|..||.:||.:||..|.|:||||||.||:::.|....|.||||::||.
  Rat    29 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 93

  Fly    81 LLKGHFFLGQGLMEIDNFDEAIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQ 145
            .:|.||||||..:|::::||||.:|||||.|:|||:.||||||...||:|:|||||.:||:||.|
  Rat    94 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 158

  Fly   146 EIELQSYLNGLIKGDMESRLANLKLN--GNVHDEQLKDKQQEIEQECDDHIKELNNIFSKVDERR 208
            |.||.|||..||..:.|..|...:.|  |:..|..::.:|..||.:.|.::.::|.:||:|||:|
  Rat   159 ESELHSYLTRLIAAERERELEECQRNHEGDEDDGHIRAQQACIEAKHDKYMADMNELFSQVDEKR 223

  Fly   209 KKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRVGHFDPVTRVKLTQDQLIPNFSMK 273
            |||::||:||||||||::.:|.||||||||:|||||||||||||||||||..|||:|||||.:||
  Rat   224 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMK 288

  Fly   274 EVVDSFIAENEWSLDY 289
            ||:|:||:||.|..||
  Rat   289 EVIDAFISENGWVEDY 304

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.