DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBC1D16 and SGSM1

DIOPT Version :9

Sequence 1:NP_609403.2 Gene:TBC1D16 / 34431 FlyBaseID:FBgn0032249 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001035037.1 Gene:SGSM1 / 129049 HGNCID:29410 Length:1148 Species:Homo sapiens


Alignment Length:977 Identity:183/977 - (18%)
Similarity:304/977 - (31%) Gaps:438/977 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ILFCKNNVCIHPPTIARDESDILHNPGYLTCTTKTFVDQYNSAKRPTLLLTWIPNSSLCKYTNLN 97
            :|:.||||.:.|    ||:.:.:  ||||:......|          :.|.|.||..:    |.:
Human   256 LLYGKNNVLVQP----RDDMEAV--PGYLSLHQTADV----------MTLKWTPNQLM----NGS 300

  Fly    98 ADD-------------------------------------------------------------C 101
            ..|                                                             |
Human   301 VGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSC 365

  Fly   102 -------RGQCNP---------------RSKSPDSRNGYCHVTIPQTIQERDIREEDENAAD--- 141
                   .||.:|               |.:||..       :...|..::|    |:.|.|   
Human   366 LENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQG-------SAESTSSDKD----DDEATDYVF 419

  Fly   142 ------MQELKNELQPLLGGQAASID------------DLTALLKNN------------------ 170
                  ||  ...:.|...|..:|:.            .:..:.:.:                  
Human   420 RIIYPGMQ--SEFVAPDFLGSTSSVSVGPAWMMVPAGRSMLVVARGSQWEPARWDTTLPTPSPKE 482

  Fly   171 ----PITSVNITISN-PQIENSNISQSFNCITIRPDSNNCSDCTNGSGVGDGPAT---------- 220
                |...:::::|| |.:...:           |..::||.|:. ||..||.:|          
Human   483 QPPMPQDLMDVSVSNLPSLWQPS-----------PRKSSCSSCSQ-SGSADGSSTNGCNHERAPL 535

  Fly   221 ----DNPKWTTPELL--AFKHNLEFPDSGNSTPADRQKSAMKCRHFS---VDLSQMRSLRLFFND 276
                ||.|:   ::|  ||...|.:                 |||.|   ..||.:.:..:...|
Human   536 KLLCDNMKY---QILSRAFYGWLAY-----------------CRHLSTVRTHLSALVNHMIVSPD 580

  Fly   277 DNCTSGQLVIASRESQYKILH-------------FHYGG-------------LDH---------- 305
            ..|.:||.:.|....||  ||             .:|||             |.|          
Human   581 LPCDAGQGLTARIWEQY--LHDSTSYEEQELLRLIYYGGIQPEIRKAVWPFLLGHYQFGMTETER 643

  Fly   306 ----------LAQVLHQW--------------------------------HCFLH---NITSETG 325
                      .||.:.:|                                |..||   .|::|:.
Human   644 KEVDEQIHACYAQTMAEWLGCEAIVRQRERESHAAALAKCSSGASLDSHLHRMLHRDSTISNESS 708

  Fly   326 QDKFDLPYRHFMVCRPEVKKSEMHPDEGDVKKITTNFFYGTLLNEKGQIED--------DLLLRK 382
            |.           |....:...:|.|.....::..:......:..:|::|:        :|:...
Human   709 QS-----------CSSGRQNIRLHSDSSSSTQVFESVDEVEQVEAEGRLEEKQPKIPNGNLVNGT 762

  Fly   383 CV----------FFGGL----EKSL----------RKTVWPFLL---------KCYSFSSTFEDR 414
            |.          |..||    |.||          |.|  |.:|         :..|.::|.:|.
Human   763 CSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRNT--PTVLRPRDGSVDDRQSSEATTSQDE 825

  Fly   415 A--------------VLMDIKRQEYEEIT------------------------------RKRLYS 435
            |              :|.:....|:..||                              .:...|
Human   826 APREELAVQDSLESDLLANESMDEFMSITGSLDMALPEKDDVVMEGWRSSETEKHGQADSEDNLS 890

  Fly   436 MSPEQQIHFWKTVQIVV--------------------------------EKDVVRTDRTNPFFCG 468
            ..||.:..|.....:.|                                ||||.|.||...:|  
Human   891 EEPEMESLFPALASLAVTTSANEVSPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRNYWYF-- 953

  Fly   469 DDNP-NTEVMKNILLNFAVYNTGMSYSQGMSDLLAPVLCEVQNESETFWCFVGLMQRA---FFVC 529
              .| |.|.::||:.::...:..:.|.|||.|||||:|..:.:|:..|.||..||:|.   |   
Human   954 --TPANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNF--- 1013

  Fly   530 TPTDRDVDHNLSYLRELIRIMLPHFYKHLEQHNDSMELLFCHRWLLLCFKREFTEAVVIRMWEAC 594
             |....:|.:.:.:|.||:|:....::.:.|:.|.....||:||.||.||||.....|..:||..
Human  1014 -PHGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFLVWETI 1077

  Fly   595 WS--NYLTDYFHLFLCLAIIAVYADDVVAQNLRPDEMLLHFSSLAMYMDGQLILRKARGLLHQYR 657
            |:  :..:.::.||:.||::.||.|.::..|:...:::..|:.:|...:.:.:|:.||.|:::.:
Human  1078 WAAKHVSSAHYVLFIALALVEVYRDIILENNMDFTDIIKFFNEMAERHNTKQVLKLARDLVYKVQ 1142

  Fly   658 QL 659
            .|
Human  1143 TL 1144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBC1D16NP_609403.2 TBC 387..618 CDD:214540 81/335 (24%)
SGSM1NP_001035037.1 RUN 44..188 CDD:280855
PH_RUTBC 254..425 CDD:275431 31/199 (16%)
Important for interaction with RAB9A and RAB9B. /evidence=ECO:0000250|UniProtKB:Q8BPQ7 256..297 17/56 (30%)
Required for interaction with RAP family members 301..350 1/48 (2%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..411 6/44 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 700..830 24/142 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 871..894 1/22 (5%)
TBC <936..1105 CDD:214540 60/176 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.