DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TfIIB and TFIIB

DIOPT Version :9

Sequence 1:NP_001260349.1 Gene:TfIIB / 34430 FlyBaseID:FBgn0004915 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_181694.1 Gene:TFIIB / 818761 AraportID:AT2G41630 Length:312 Species:Arabidopsis thaliana


Alignment Length:306 Identity:148/306 - (48%)
Similarity:194/306 - (63%) Gaps:18/306 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 77
            |.....|:.|:.|:.|||.:|||||||:....||..||||||:||.|..||:|||||.||||:..
plant     6 CTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADS 70

  Fly    78 DLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLF 141
            .|:|:|. |...|..|.:....::|||.  |:|||.||.|||.|::|::|:.|..||.||||.|:
plant    71 ALTTVIAKPNGSSGDFLSSSLGRWQNRN--SNSDRGLIQAFKTIATMSERLGLVATIKDRANELY 133

  Fly   142 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKAL---- 201
            |::.|.|:.:||:.||..:||||||||||..|||.||||.::. .:||||||.....:|.|    
plant   134 KRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEP 198

  Fly   202 ETSVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQAS 264
            ..||||  |...|||.|||:||.:.|...:||....:|:.|.||  .|||||:||..||:.:|.|
plant   199 GQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI--RRSPISIAAVVIYIITQLS 261

  Fly   265 EHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP------EDFK 304
            :.|::.|:|....|||:.|||.|||.:|||.:|:.|      ||.|
plant   262 DDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLK 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIBNP_001260349.1 SUA7 22..289 CDD:224323 136/274 (50%)
TFIIBNP_181694.1 SUA7 6..298 CDD:224323 144/295 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2920
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1158
Inparanoid 1 1.050 258 1.000 Inparanoid score I988
OMA 1 1.010 - - QHG62181
OrthoDB 1 1.010 - - D729732at2759
OrthoFinder 1 1.000 - - FOG0002451
OrthoInspector 1 1.000 - - otm2694
orthoMCL 1 0.900 - - OOG6_101024
Panther 1 1.100 - - O PTHR11618
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2171
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.