DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIB and Gtf2b

DIOPT Version :9

Sequence 1:NP_001260349.1 Gene:TfIIB / 34430 FlyBaseID:FBgn0004915 Length:315 Species:Drosophila melanogaster
Sequence 2:NP_112303.1 Gene:Gtf2b / 81673 RGDID:619735 Length:316 Species:Rattus norvegicus


Alignment Length:316 Identity:250/316 - (79%)
Similarity:281/316 - (88%) Gaps:1/316 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASTSRLDN-NKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 64
            ||||||||. .:|.|..||::.|:||||||||||.||||||||||||||||||||||:|:..|||
  Rat     1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPS 65

  Fly    65 RVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINL 129
            |||..:|||||.|||||:||.|||:||||.||..|||||||||||||::::|||||::|||||||
  Rat    66 RVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINL 130

  Fly   130 PKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 194
            |:.||||.|||||||::.|:||||:|||.|||||||||||||||||||||||||:||||||||||
  Rat   131 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF 195

  Fly   195 KLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYM 259
            ||.|||||||||||||.|||.|||:||.||..||.||||||:||||:|:||||||||||||||||
  Rat   196 KLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 260

  Fly   260 ASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFTTPIDQLPQM 315
            |||||..||:|||||||||||||||||||:|:||.|..|||.||||.||:|:|||:
  Rat   261 ASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKLPQL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIBNP_001260349.1 SUA7 22..289 CDD:224323 220/266 (83%)
Gtf2bNP_112303.1 SUA7 14..290 CDD:224323 223/275 (81%)
Repetitive region 124..200 64/75 (85%)
Core promoter DNA-binding. /evidence=ECO:0000250|UniProtKB:Q00403 189..193 3/3 (100%)
Repetitive region 218..294 62/75 (83%)
Necessary for TATA box-bound TBP complex formation. /evidence=ECO:0000250|UniProtKB:Q00403 244..316 58/71 (82%)
Core promoter DNA-binding. /evidence=ECO:0000250|UniProtKB:Q00403 249..252 2/2 (100%)
Core promoter DNA-binding. /evidence=ECO:0000250|UniProtKB:Q00403 283..286 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341969
Domainoid 1 1.000 123 1.000 Domainoid score I5483
eggNOG 1 0.900 - - E1_COG1405
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1158
Inparanoid 1 1.050 499 1.000 Inparanoid score I1319
OMA 1 1.010 - - QHG62181
OrthoDB 1 1.010 - - D381183at33208
OrthoFinder 1 1.000 - - FOG0002451
OrthoInspector 1 1.000 - - oto97629
orthoMCL 1 0.900 - - OOG6_101024
Panther 1 1.100 - - LDO PTHR11618
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2171
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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