DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5188 and Pa2g4

DIOPT Version :10

Sequence 1:NP_609401.2 Gene:CG5188 / 34428 FlyBaseID:FBgn0032247 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_035249.1 Gene:Pa2g4 / 18813 MGIID:894684 Length:394 Species:Mus musculus


Alignment Length:325 Identity:62/325 - (19%)
Similarity:110/325 - (33%) Gaps:85/325 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 IKSQVQIDAMRLSGRLAARILRECGKLATVGTTTDQIDAFAHERILES-----KAYPSPLRYAGF 132
            |...:.:...::.|.:|.|:||...:.::.|.:...:.......|:|.     |......:...|
Mouse    12 IAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKKGIAF 76

  Fly   133 PKSICTSINNIACHGIP----DDRQLADGDIINIDVTVFLNGYHGDCSETFRVG-----NVDERG 188
            |.||  |:||..||..|    .|..|.:||::.||:.|.::|:..:.:.||.:|     .|..|.
Mouse    77 PTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRK 139

  Fly   189 GFLVEATKSCLDQCISLCGPGVEFNEIGKFIDRYCDEHDLASIAAFIGHGIGSY-FHGPPEILH- 251
            ..:::|...|.:..:.|..||.:..::.:..::.....:...|...:.|.:..: ..|...|:. 
Mouse   140 ADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQN 204

  Fly   252 -----------------------------------------YYNEIPGKMQ-------------- 261
                                                     .|...|.|..              
Mouse   205 PTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEV 269

  Fly   262 ----PGMTFTI-----EPILSLGGAEIA---VLQDGWTAISLDGARSAQFEHTILITETGTEILT 314
                ..|.||:     |....:|..|.|   :||........:|...|||:.|:|:...|...:|
Mouse   270 ERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRIT 334

  Fly   315  314
            Mouse   335  334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5188NP_609401.2 MetAP1 79..315 CDD:238519 61/319 (19%)
Pa2g4NP_035249.1 crvDNA_42K 1..388 CDD:273105 62/325 (19%)
Necessary for nucleolar localization. /evidence=ECO:0000250|UniProtKB:Q9UQ80 2..48 7/35 (20%)
RNA-binding. /evidence=ECO:0000250|UniProtKB:Q9UQ80 46..54 0/7 (0%)
Necessary for nucleolar localization. /evidence=ECO:0000250|UniProtKB:Q9UQ80 301..394 10/34 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 358..394
Interaction with RNA. /evidence=ECO:0000269|PubMed:17690690 361..375
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.