DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmB and AT5G44500

DIOPT Version :9

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001032011.1 Gene:AT5G44500 / 834477 AraportID:AT5G44500 Length:254 Species:Arabidopsis thaliana


Alignment Length:232 Identity:117/232 - (50%)
Similarity:141/232 - (60%) Gaps:39/232 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKI--RSKNSKV-PERE 62
            |::.|::||:|.:|||:|:.:||.|..||.|.|||:||||:|||||||||:  ...|.|. .|||
plant     1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEERE 65

  Fly    63 EKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPIN--LSAVPAGL 125
            |:|.||.||||||.::|:||||||||||...:.....|..||||||.||||:|..  :.|.| ||
plant    66 ERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQP-GL 129

  Fly   126 QGPVRGVGGPA-----------QQHMAPMGRGVPRAPM--MGAPPP--GMIP----------GGM 165
            .|||||:||||           .|.:.|.|:..|:.|.  .|.|||  ||.|          ||.
plant   130 SGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQPPFAGQGGPPPPYGMRPPYPGPPPPQYGGQ 194

  Fly   166 --PSM---PGNMGRGAPPP--MRGPPPSMIRGAPPPG 195
              |.|   ||.|.||.|||  |:|||||. .|.||||
plant   195 QRPMMIPPPGGMMRGPPPPHGMQGPPPSR-PGMPPPG 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 46/79 (58%)
AT5G44500NP_001032011.1 Sm_B 5..86 CDD:212464 47/80 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 101 1.000 Domainoid score I2326
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I1326
OMA 1 1.010 - - QHG54849
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002776
OrthoInspector 1 1.000 - - otm2751
orthoMCL 1 0.900 - - OOG6_101868
Panther 1 1.100 - - LDO PTHR10701
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2167
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

Return to query results.
Submit another query.