DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmB and AT4G18372

DIOPT Version :10

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_680719.1 Gene:AT4G18372 / 827565 AraportID:AT4G18372 Length:112 Species:Arabidopsis thaliana


Alignment Length:64 Identity:24/64 - (37%)
Similarity:37/64 - (57%) Gaps:4/64 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IQHLNYRVRIV-LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
            ::.|.:|..:| ::|.|.|:|.|...||..|:||.|..|:|.||..:   |...|:|.||.:|:
plant    27 LRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSS---PSPTEQRCLGMILI 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 24/64 (38%)
AT4G18372NP_680719.1 LSMD1 24..98 CDD:212486 24/64 (38%)

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