Protein Alignment SmB and Snrpn

DIOPT Version :10

• Sequence 1: NP_001188780.1
• Gene: SmB / 34426
• FlyBaseID: FBgn0262601
• Length: 199
• Species: Drosophila melanogaster
• Sequence 2: NP_112379.1
• Gene: Snrpn / 81781
• RGDID: 621306
• Length: 240
• Species: Rattus norvegicus
• Alignment Length: 235
• Identity: 132/235 - (56%)
• Similarity: 155/235 - (65%)
• Gaps: 41/235 - (17%)

  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKR 65
            ||:||::||:||::||:|.:|||.|.||||||||||||||||.||:|||||:.||:|.|||||||
  Rat     1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65

  Fly    66 VLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMP--INLSAVPAGLQGP 128
            |||.|||||||:||:|||||||.:.|:.|||:.|||.|||:||.||||:|  :.:...||||.||
  Rat    66 VLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGP 130

  Fly   129 VRGVGGPAQQHMAPMGRG------------------------------VPRA---PMMGAPPPGM 160
            |||||||:||.|.|.|||                              |.||   |.:.||||||
  Rat   131 VRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195

  Fly   161 IPG-----GMPSMPGNMGRGAPPPMRGPPPSMIRGAPPPG 195
            .|.     |:|...|. ..|.|||...|||..|||.||||
  Rat   196 RPPMGPPIGLPPARGT-PIGMPPPGMRPPPPGIRGPPPPG 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SmB	NP_001188780.1	Sm_B	5..82	CDD:212464	57/76 (75%)
Snrpn	NP_112379.1	Sm_B	5..83	CDD:212464	58/77 (75%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	163..240		28/73 (38%)
		Repeat-rich region	175..236		28/61 (46%)