DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmB and Snrpd3

DIOPT Version :9

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_080371.1 Gene:Snrpd3 / 67332 MGIID:1914582 Length:126 Species:Mus musculus


Alignment Length:136 Identity:31/136 - (22%)
Similarity:54/136 - (39%) Gaps:22/136 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRT---FIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPERE 62
            |:||...|::...  ...||..::.|   :.|.....:.:||..:.:.    .:..::.:|.:.|
Mouse     1 MSIGVPIKVLHEA--EGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNI----TVTYRDGRVAQLE 59

  Fly    63 EKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSAVPAGLQG 127
            :      |.:||..|..|.:      .:.|...|:..:......|..||||....|.|..|. :|
Mouse    60 Q------VYIRGSKIRFLIL------PDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAA-RG 111

  Fly   128 PVRGVG 133
            ..||:|
Mouse   112 RGRGMG 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 14/79 (18%)
Snrpd3NP_080371.1 Sm_D3 6..75 CDD:212468 14/86 (16%)
5 X 2 AA tandem repeats of [RM]-G 110..119 4/8 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.