DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmB and snrpd2

DIOPT Version :9

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001005128.1 Gene:snrpd2 / 448710 XenbaseID:XB-GENE-964248 Length:118 Species:Xenopus tropicalis


Alignment Length:70 Identity:18/70 - (25%)
Similarity:39/70 - (55%) Gaps:6/70 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLGFVLLR 73
            |.:|.|..::::..:|..||||:|.|::|.:.:|.     :..:.|....|..:: |.:..:.||
 Frog    39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD-RYISKMFLR 102

  Fly    74 GENIV 78
            |::::
 Frog   103 GDSVI 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 18/70 (26%)
snrpd2NP_001005128.1 Sm_D2 24..113 CDD:212467 18/70 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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