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Protein Alignment SmB and snrpd3
DIOPT Version :9
Sequence 1: | NP_001188780.1 |
Gene: | SmB / 34426 |
FlyBaseID: | FBgn0262601 |
Length: | 199 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001002081.1 |
Gene: | snrpd3 / 415171 |
ZFINID: | ZDB-GENE-040625-55 |
Length: | 127 |
Species: | Danio rerio |
Alignment Length: | 94 |
Identity: | 27/94 - (28%) |
Similarity: | 38/94 - (40%) |
Gaps: | 25/94 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 54 KNSKVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRV-PIPGAAPGPGIGRVAGRGMPIN 117
::.:|.:.|: |.:||..|..|.: |...:..|.: .:....|..| ||||....
Zfish 51 RDGRVAQLEQ------VYIRGSKIRFLIL---PDMLKNAPMLKSMKNKNPAAG----AGRGKAAI 102
Fly 118 LSAVPAGLQGPVRGVGGPAQQHMAPMGRG 146
|.|..|. :| ||.||| |||
Zfish 103 LKAQVAA-RG--RGRGGP--------GRG 120
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmB | NP_001188780.1 |
Sm_B |
5..82 |
CDD:212464 |
7/27 (26%) |
snrpd3 | NP_001002081.1 |
Sm_D3 |
6..75 |
CDD:212468 |
7/32 (22%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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