DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmB and snrpb

DIOPT Version :9

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001001198.1 Gene:snrpb / 407857 XenbaseID:XB-GENE-5877283 Length:237 Species:Xenopus tropicalis


Alignment Length:213 Identity:135/213 - (63%)
Similarity:155/213 - (72%) Gaps:17/213 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKR 65
            ||:||::||:||::||:|.:|||.|.||||||||||||||||.||:|||||:.||||.|||||||
 Frog     1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKR 65

  Fly    66 VLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPIN--LSAVPAGLQGP 128
            |||.|||||||:||:|||||||.:.|:.|||:.|||.|||:||.||||:|..  :...||||.||
 Frog    66 VLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGP 130

  Fly   129 VRGVGGPAQQHMAPMGRG-------VPRAPMMGAPPPGMIPGGMPSMPGNMGRGAPPP-MRGPPP 185
            |||||||:||.|.|.|||       ...|.:.|||.|.....|.|..|  |||||||| |.||||
 Frog   131 VRGVGGPSQQVMTPQGRGNVAAAAAAATASIAGAPTPYAAGRGGPPPP--MGRGAPPPGMMGPPP 193

  Fly   186 SM--IRGAP---PPGRGG 198
            .|  ..|.|   ||||||
 Frog   194 GMRPPMGPPMGMPPGRGG 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 58/76 (76%)
snrpbNP_001001198.1 Sm_B 5..83 CDD:212464 59/77 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 126 1.000 Domainoid score I5378
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68297
Inparanoid 1 1.050 256 1.000 Inparanoid score I3080
OMA 1 1.010 - - QHG54849
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002776
OrthoInspector 1 1.000 - - oto104475
Panther 1 1.100 - - LDO PTHR10701
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1254
SonicParanoid 1 1.000 - - X2167
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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