DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmB and Sbat

DIOPT Version :10

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_722859.1 Gene:Sbat / 319043 FlyBaseID:FBgn0051950 Length:121 Species:Drosophila melanogaster


Alignment Length:87 Identity:29/87 - (33%)
Similarity:50/87 - (57%) Gaps:10/87 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKR 65
            :|.|: .|:.:.|...:|||:.|.|..:|.|...|:..|::|..|.|:         :.|.:|.|
  Fly    38 LTPGR-RKLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVEGQEPR 92

  Fly    66 VLGFVLLRGENIVSLTVEGPPP 87
            :||.|::.|::||||:::.|.|
  Fly    93 LLGNVMVPGQHIVSLSIDEPDP 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 25/76 (33%)
SbatNP_722859.1 LSMD1 42..110 CDD:212486 25/77 (32%)

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