DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmB and Snrpd1

DIOPT Version :9

Sequence 1:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001099633.1 Gene:Snrpd1 / 291794 RGDID:1306345 Length:119 Species:Rattus norvegicus


Alignment Length:137 Identity:35/137 - (25%)
Similarity:52/137 - (37%) Gaps:30/137 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KMIQHL----NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLG 68
            |:::.|    :..|.|.|::.....||....|..||..|    :..|:..||.:..:.|...:.|
  Rat     2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHL----KAVKMTLKNREPVQLETLSIRG 62

  Fly    69 -----FVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSAVPAGLQGP 128
                 |:|.....:.:|.|: ..|..:...|..:.|...|.|.||..|||               
  Rat    63 NNIRYFILPDSLPLDTLLVD-VEPKVKSKKREAVAGRGRGRGRGRGRGRG--------------- 111

  Fly   129 VRGVGGP 135
             ||.|||
  Rat   112 -RGRGGP 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 19/82 (23%)
Snrpd1NP_001099633.1 Sm_D1 2..93 CDD:212471 21/95 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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