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Protein Alignment SmB and snr-2
DIOPT Version :9
| Sequence 1: | NP_001188780.1 |
Gene: | SmB / 34426 |
FlyBaseID: | FBgn0262601 |
Length: | 199 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_493348.1 |
Gene: | snr-2 / 173204 |
WormBaseID: | WBGene00004915 |
Length: | 160 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 173 |
Identity: | 87/173 - (50%) |
| Similarity: | 108/173 - (62%) |
Gaps: | 21/173 - (12%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKR 65
|||.|||||:.|||||::|:|||.|||||.|||||||||::|.:|||.|:|:.|..|..:.||||
Worm 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKR 65
Fly 66 VLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMP-------INLSAVPA 123
:||.||:|||:|||:||:||||.::...|:...|.|.|.|..:..||||| :.....|.
Worm 66 ILGLVLVRGEHIVSMTVDGPPPRDDDSVRLAKAGGAGGVGQAKPGGRGMPAMPGMPGMPPGGAPG 130
Fly 124 GLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPPPGMIPGGMP 166
||.|.:||.|||....|.| |.|.| |||.|
Worm 131 GLSGAMRGHGGPGMAAMQP-GYGGP-------------PGGRP 159
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmB | NP_001188780.1 |
Sm_B |
5..82 |
CDD:212464 |
50/76 (66%) |
| snr-2 | NP_493348.1 |
Sm_B |
5..83 |
CDD:212464 |
51/77 (66%) |
Information from Original Tools:
| Tool |
Simple Score |
Weighted Score |
Original Tool Information |
| BLAST Result |
Score |
Score Type |
Cluster ID |
| Compara |
1 |
0.930 |
- |
- |
|
C160160070 |
| Domainoid |
1 |
1.000 |
104 |
1.000 |
Domainoid score |
I4228 |
| eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
| Hieranoid |
1 |
1.000 |
- |
- |
|
|
| Homologene |
1 |
1.000 |
- |
- |
|
H68297 |
| Inparanoid |
1 |
1.050 |
161 |
1.000 |
Inparanoid score |
I2861 |
| Isobase |
0 | 0.000 |
Not matched by this tool. |
| OMA |
1 |
1.010 |
- |
- |
|
QHG54849 |
| OrthoDB |
0 | 0.000 |
Not matched by this tool. |
| OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0002776 |
| OrthoInspector |
1 |
1.000 |
- |
- |
|
oto20509 |
| orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_101868 |
| Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR10701 |
| Phylome |
1 |
0.910 |
- |
- |
|
|
| RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R1254 |
| SonicParanoid |
1 |
1.000 |
- |
- |
|
X2167 |
| SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
| TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
14 | 13.830 |
|
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