Protein Alignment SmB and Snrpb

DIOPT Version :10

• Sequence 1: NP_001188780.1
• Gene: SmB / 34426
• FlyBaseID: FBgn0262601
• Length: 199
• Species: Drosophila melanogaster
• Sequence 2: NP_599185.1
• Gene: Snrpb / 171365
• RGDID: 621301
• Length: 231
• Species: Rattus norvegicus
• Alignment Length: 215
• Identity: 136/215 - (63%)
• Similarity: 156/215 - (72%)
• Gaps: 23/215 - (10%)

  Fly     1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKR 65
            ||:||::||:||::||:|.:|||.|.||||||||||||||||.||:|||||:.||||..||||||
  Rat     1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65

  Fly    66 VLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMP--INLSAVPAGLQGP 128
            |||.|||||||:||:|||||||.:.|:.|||:.|||.||||||.||||:|  :.:...||||.||
  Rat    66 VLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 130

  Fly   129 VRGVGGPAQQHMAPMGRG-------VPRAPMMGAP---PPGMIPGGMPSMPGNMGRGAPPP-MRG 182
            |||||||:||.|.|.|||       ...|.:.|||   |||.  ||.|.   .|||||||| |.|
  Rat   131 VRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR--GGPPP---PMGRGAPPPGMMG 190

  Fly   183 PPPSM--IRGAP---PPGRG 197
            |||.|  ..|.|   |||||
  Rat   191 PPPGMRPPMGPPMGIPPGRG 210

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SmB	NP_001188780.1	Sm_B	5..82	CDD:212464	57/76 (75%)
Snrpb	NP_599185.1	Sm_B	5..83	CDD:212464	58/77 (75%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	163..231		30/53 (57%)
		Repeat-rich region	175..228		22/39 (56%)