DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdfy2 and Stam2

DIOPT Version :10

Sequence 1:NP_609400.1 Gene:Wdfy2 / 34425 FlyBaseID:FBgn0032246 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001012085.1 Gene:Stam2 / 311030 RGDID:1311497 Length:523 Species:Rattus norvegicus


Alignment Length:56 Identity:14/56 - (25%)
Similarity:23/56 - (41%) Gaps:19/56 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 DCNRLSFL----RDYLSHQARVMAVVFSKTH------------KWILSAGKDKQFA 147
            :|.::..|    ||:.:   .|.||:.:|.|            :|.....||.||:
  Rat    75 NCGKIFHLEVCSRDFAT---EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFS 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdfy2NP_609400.1 WD40 24..279 CDD:475233 14/56 (25%)
WD40 repeat 35..72 CDD:293791
WD40 repeat 80..117 CDD:293791 2/12 (17%)
WD40 repeat 125..161 CDD:293791 10/35 (29%)
WD40 repeat 166..205 CDD:293791
WD40 repeat 211..248 CDD:293791
WD40 repeat 253..283 CDD:293791
FYVE_WDFY1_like 287..356 CDD:277258
WD40 repeat 324..371 CDD:293791
Stam2NP_001012085.1 VHS_STAM2 9..147 CDD:340796 14/56 (25%)
PxVxL motif 54..67
UIM 166..181 CDD:460703
SH3_STAM2 204..260 CDD:212896
Interaction with USP8. /evidence=ECO:0000250 219..220
GAT_STAM2 286..376 CDD:410595
Interaction with HGS. /evidence=ECO:0000250 334..368
Blue background indicates that the domain is not in the aligned region.

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