Protein Alignment RfC3 and holB

DIOPT Version :10

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_415617.1
• Gene: holB / 945661
• ECOCYCID: EG11500
• Length: 334
• Species: Escherichia coli
• Alignment Length: 327
• Identity: 72/327 - (22%)
• Similarity: 111/327 - (33%)
• Gaps: 93/327 - (28%)

  Fly    47 LLFYGPPGTGKTSTILACARQL--YSPQQFKSMVLELNASDDRGIGIVRGQILNFAST------- 102
            ||....||.|..:.|.|.:|.|  ..||..||            .|..||..|..|.|
E. coli    27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKS------------CGHCRGCQLMQAGTHPDYYTL 79

  Fly   103 ------RTIFCDTF----------------KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVI 145
                  .|:..|..                |::.:.:|..:|:.|.|||.:.:|:......|.:.
E. coli    80 APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144

  Fly   146 CNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNV 210
            .....:::..|:|||.....||..:...:..|.:     .|.:::|...|.|.|:.|.....|.:
E. coli   145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALAL 204

  Fly   211 LQSTVMAFDTVNEDN------VYMCVGYPLRQ-DIEQILKAL----------LSGSSLEDSFKTV 258
            .|.          ||      :...:.|.:.. |...:|.||          ...:.|.|:.|..
E. coli   205 FQG----------DNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRH 259

  Fly   259 ESAKYARGLALEDIITEL--HLFVMRL-----------ELPMSVM---NKLIVK--LAQIEERLA 305
            ..|.....:.:..::.||  ||...||           |..|||.   .:|::.  |.:||..|.
E. coli   260 HGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQ 324

  Fly   306 KG 307
            .|
E. coli   325 PG 326

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	72/327 (22%)
holB	NP_415617.1	PRK07993	1..334	CDD:181190	72/327 (22%)