Protein Alignment RfC3 and rarA

DIOPT Version :10

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_415412.1
• Gene: rarA / 945505
• ECOCYCID: EG12690
• Length: 447
• Species: Escherichia coli
• Alignment Length: 284
• Identity: 66/284 - (23%)
• Similarity: 114/284 - (40%)
• Gaps: 53/284 - (18%)

  Fly    12 PWVEKYRPSGLDDLISHEEIIST---ITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQ 73
            |...:.||..|...|..:.:::.   :.|.|....|..::.:||||||||:.....||
E. coli    15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR------- 72

  Fly    74 FKSMVLELNASDDRGI-----GIVRGQILNFASTRTI-FCDTFKLIILDEADAMTNDAQNALRRI 132
            :.:..:|..::...|:     .|.|.:....|..||| |.|........:.||.....::.....
E. coli    73 YANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137

  Fly   133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIE-------AEAVQITE 190
            |...|:|..|        ::..||.||...:....||.:.:...|.:.:|       .:.:.:.:
E. coli   138 IGATTENPSF--------ELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPD 194

  Fly   191 DGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILK-ALLSGSSLEDS 254
            :.:||:..|..||.|:.||.|:   |..|....|:           ..:::|| .||:..:.|
E. coli   195 ETRRAIAELVNGDARRALNTLE---MMADMAEVDD-----------SGKRVLKPELLTEIAGE-- 243

  Fly   255 FKTVESAKY-ARGLALEDIITELH 277
                .||:: .:|....|:|:.||
E. coli   244 ----RSARFDNKGDRFYDLISALH 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	66/284 (23%)
rarA	NP_415412.1	RarA	1..442	CDD:441857	66/284 (23%)