Protein Alignment RfC3 and RFC3

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_014109.1
• Gene: RFC3 / 855426
• SGDID: S000005234
• Length: 340
• Species: Saccharomyces cerevisiae
• Alignment Length: 324
• Identity: 158/324 - (48%)
• Similarity: 216/324 - (66%)
• Gaps: 24/324 - (7%)

  Fly    11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
            :||||||||..||::....|:|:|:.:|:...:||||||||||||||||||:|.||::|. :.:.
Yeast    13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYS 76

  Fly    76 SMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNV 140
            :|||||||||||||.:||.||.:|||||.||...||||||||||||||.|||||||:||:||.|.
Yeast    77 NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNT 141

  Fly   141 RFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMR 205
            ||||:.||..|:.|||.||||||||.||.|:.:..|:..::..|.::::.:.::||:.|:.||||
Yeast   142 RFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206

  Fly   206 KVLNVLQSTVMAFDTVNEDN-----VYMCVGYPLRQDIEQILKALLSGSSLEDSF----KTVESA 261
            :|||||||.....|..:||.     :|.|.|.|...|::.:||::     |||.:    .|:...
Yeast   207 RVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSI-----LEDDWGTAHYTLNKV 266

  Fly   262 KYARGLALEDIITELHLFVMRLELPMSVMNK-----LIVKLAQIEERLAKGCTEVAQTAALVAA 320
            :.|:||||.|:|..:...:...||    .|:     |:.|||.||..::||..:..|.:|::.|
Yeast   267 RSAKGLALIDLIEGIVKILEDYEL----QNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGA 326

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	158/323 (49%)
RFC3	NP_014109.1	rfc	11..324	CDD:234763	157/320 (49%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C157343726
Domainoid	1	1.000	174	1.000	Domainoid score	I748
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H6730
Inparanoid	1	1.050	292	1.000	Inparanoid score	I521
Isobase	1	0.950	-	0	Normalized mean entropy	S415
OMA	1	1.010	-	-		QHG53599
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	1	1.000	-	-		oto99977
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	1	1.100	-	-	LDO	PTHR11669
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1089
SonicParanoid	1	1.000	-	-		X3552
TreeFam	1	0.960	-	-
	16	15.740