Protein Alignment RfC3 and EMB1968

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_001185061.1
• Gene: EMB1968 / 838771
• AraportID: AT1G21690
• Length: 341
• Species: Arabidopsis thaliana
• Alignment Length: 312
• Identity: 124/312 - (39%)
• Similarity: 177/312 - (56%)
• Gaps: 23/312 - (7%)

  Fly    12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKS 76
            ||||||||..:.|:...||::..:|..:.....||:|||||||||||:|.||.|.||:.|:.:||
plant    10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS 74

  Fly    77 MVLELNASDDRGIGIVRGQILNFASTRT--------IFCDTFKLIILDEADAMTNDAQNALRRII 133
            .||||||||||||.:||.:|.:||:...        ..|.:||:|||||||:||.||||||||.:
plant    75 RVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTM 139

  Fly   134 EKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLT 198
            |.|:...||..||||:|:||..|.|||.:|||.|||::.|..|:..|...|.:.:..:....|.:
plant   140 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSS 204

  Fly   199 LAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAK 262
            :::||:|:.:..|||....| .|:...::....|....:.:.::..|..|| ..:.:.|.|::.
plant   205 ISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSG-DFDIANKEVDNI- 267

  Fly   263 YARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQT 314
            .|.|.....||.:|...|...:..::.|.|            ||.|..:|:|
plant   268 VAEGYPASQIINQLFDIVAEADSDITDMQK------------AKICKCLAET 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	124/312 (40%)
EMB1968	NP_001185061.1	PRK12402	11..308	CDD:237090	123/311 (40%)
		AAA	26..166	CDD:99707	75/139 (54%)
		AAA_assoc_2	189..>220	CDD:292811	7/30 (23%)
		Rep_fac_C	256..>309	CDD:285713	15/65 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG53599
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.830