DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC3 and RFC1

DIOPT Version :10

Sequence 1:NP_609399.1 Gene:RfC3 / 34423 FlyBaseID:FBgn0032244 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001191676.1 Gene:RFC1 / 5981 HGNCID:9969 Length:1148 Species:Homo sapiens


Alignment Length:307 Identity:72/307 - (23%)
Similarity:120/307 - (39%) Gaps:93/307 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ETSGPA--------------VRMPWVEKYRPSGLDDLISHEEIISTITRFI---------SRKQL 44
            ||||.:              ..:.||:||:|:.|..:|..:...|...:.:         |.:..
Human   562 ETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDK 626

  Fly    45 PH------------------LLFYGPPGTGKTSTI-LACARQLYSPQQFKSMVLELNASDDR--- 87
            .|                  .|..||||.|||:|. |.|....||       .:||||||.|   
Human   627 KHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYS-------YVELNASDTRSKS 684

  Fly    88 GIGIVRGQILNFASTRTIFCD-------TFKLIILDEADAMT-NDAQNALRRIIE--KYTDNVRF 142
            .:..:..:.||..|.:..:.:       |...:|:||.|.|. |:.:..::.:|.  |:|   :.
Human   685 SLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHT---KI 746

  Fly   143 CVICNYLSKIIPALQS---RCTRFRFAPLSQDQMMPRLEKIIEA-------EAVQITEDGKRALL 197
            .:||....:..|.::|   .|...||       ..||:|:|..|       |.::|.......::
Human   747 PIICMCNDRNHPKIRSLVHYCFDLRF-------QRPRVEQIKGAMMSIAFKEGLKIPPPAMNEII 804

  Fly   198 TLAKGDMRKVLNVL-----QSTVMAFDTVNEDNVYMCVGYPLRQDIE 239
            ..|..|:|:||:.|     :|..:.:|....|:      :..::||:
Human   805 LGANQDIRQVLHNLSMWCARSKALTYDQAKADS------HRAKKDIK 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC3NP_609399.1 rfc 12..321 CDD:234763 68/284 (24%)
RFC1NP_001191676.1 PTZ00121 <14..404 CDD:173412
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..201
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 228..380
BRCT_RFC1 402..480 CDD:349383
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..538
PRK04195 584..>1003 CDD:235250 68/285 (24%)
RFC1 915..1068 CDD:462507
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1081..1148
Nuclear localization signal. /evidence=ECO:0000255 1120..1124
Blue background indicates that the domain is not in the aligned region.

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