Protein Alignment RfC3 and rfc2

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_001013344.2
• Gene: rfc2 / 503748
• ZFINID: ZDB-GENE-050306-29
• Length: 353
• Species: Danio rerio
• Alignment Length: 330
• Identity: 124/330 - (37%)
• Similarity: 197/330 - (59%)
• Gaps: 16/330 - (4%)

  Fly     8 AVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQ 72
            |..:||||||||..|::::.:||.:|.:..|.....:|:::..||||||||::||..||.|..|
Zfish    32 AYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP- 95

  Fly    73 QFKSMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRIIEKY 136
            ..|..|||||||:||||.:||.:|..||..: |:.....|:|||||||:||:.||.||||.:|.|
Zfish    96 AMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 160

  Fly   137 TDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAK 201
            :...||.:.||...|||..:||||...|::.|..:|:|.||.:::|.|.:.:|.||..|::..|:
Zfish   161 SKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQ 225

  Fly   202 GDMRKVLNVLQSTVMAFDTVNEDNVY-MC-VGYPLRQDIEQILKALLS---GSSLEDSFKTVESA 261
            ||||:.||.||||...|..:|.:||: :| ..:||      ::|::|.   .:::::::|.:|..
Zfish   226 GDMRQALNNLQSTNSGFGYINSENVFKVCDEPHPL------LVKSMLEHCVNANIDEAYKIIEQL 284

  Fly   262 KYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRD 326
             ::.|.:.||||..:.......::...:..:.|.::.....::|:|...:.|.|.|:..  :||.
Zfish   285 -WSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQMAGLLGR--LCRK 346

  Fly   327 MVSME 331
            ..:.|
Zfish   347 TATPE 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	120/314 (38%)
rfc2	NP_001013344.2	PLN03025	35..353	CDD:178596	123/327 (38%)
		AAA	50..184	CDD:99707	64/134 (48%)
		AAA_assoc_2	207..>235	CDD:292811	12/27 (44%)
		Rep_fac_C	273..341	CDD:285713	13/68 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	6	5.720