Protein Alignment RfC3 and Gnf1

DIOPT Version :10

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_001014605.1
• Gene: Gnf1 / 40607
• FlyBaseID: FBgn0004913
• Length: 1008
• Species: Drosophila melanogaster
• Alignment Length: 324
• Identity: 68/324 - (20%)
• Similarity: 120/324 - (37%)
• Gaps: 105/324 - (32%)

  Fly     9 VRMPWVEKYRPSGLDDLISHEEIISTITRF---ISRKQ----------LPHLL------------ 48
            |.|.||:|::|:.:.:::......|.:|..   :..||          .|.|:
  Fly   419 VGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQERVKVLHYFNFPRLMNWLSKWYVNHDG 483

  Fly    49 -----------------FY------GPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIG 90
                             ||      ||||.|||:|.....::|    .|.:  :|.||||.|...
  Fly   484 NKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKEL----GFDA--VEFNASDTRSKR 542

  Fly    91 IVRGQILNFASTRTI---------FCDTFKLIILDEADAMT-NDAQNALRRIIEKYTD-NVRFCV 144
            :::.::....|.:::         ......::|:||.|.|. |:.:..::.:|....| ::....
  Fly   543 LLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIIC 607

  Fly   145 ICNYLS-KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVL 208
            :||..: ..|.:|.:.|...||       ..||||:|                    ||   |::
  Fly   608 MCNDRNHPKIRSLVNYCYDLRF-------QRPRLEQI--------------------KG---KIM 642

  Fly   209 NVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDI 272
            ::.....:.......:.:.......:||.|..|  ||||..  ||:     |.|..:.:|.:|:
  Fly   643 SICFKEKVKISPAKVEEIIAATNNDIRQSINHI--ALLSAK--EDA-----SQKSGQQVATKDL 697

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	66/321 (21%)
Gnf1	NP_001014605.1	PTZ00121	<12..434	CDD:173412	6/14 (43%)
		BRCT_RFC1	232..310	CDD:349383
		PRK04195	421..969	CDD:235250	67/322 (21%)
		RFC1	764..917	CDD:462507