Protein Alignment RfC3 and RfC4

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_523915.1
• Gene: RfC4 / 38492
• FlyBaseID: FBgn0260985
• Length: 331
• Species: Drosophila melanogaster
• Alignment Length: 318
• Identity: 111/318 - (34%)
• Similarity: 180/318 - (56%)
• Gaps: 6/318 - (1%)

  Fly    11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
            :||:|||||....:::.:|:.::.::.|.::...|:::..||||.|||:||...||.|.. ..:|
  Fly    16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG-DSYK 79

  Fly    76 SMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDN 139
            ..|||||||::|||.:||.:|..||..: |:.....|::||||||:||..||.||||.:|.|:..
  Fly    80 EAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSST 144

  Fly   140 VRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDM 204
            .||.:.||...|||..:||||...||..||..|::.:|.::.:.|.:..||||..|::..|:|||
  Fly   145 TRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDM 209

  Fly   205 RKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAK-YARGLA 268
            |:.||.||||...|..:..:||:.....|..:.:|:::.. .:.:.:..::|.:  || :..|.:
  Fly   210 RQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHH-CAANDIHKAYKIL--AKLWKLGYS 271

  Fly   269 LEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRD 326
            .||||..:.....|:.:...:....|.::.....::..|...:.|..||:|...|..:
  Fly   272 PEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAE 329

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	110/310 (35%)
RfC4	NP_523915.1	PLN03025	16..330	CDD:178596	111/318 (35%)
		AAA	31..165	CDD:99707	58/134 (43%)
		Rep_fac_C	254..322	CDD:285713	14/69 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45455786
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	55	1.000	Inparanoid score	I449
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	1	1.100	-	-	P	PTHR11669
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	8	7.800