Protein Alignment RfC3 and Rfc4

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_001099339.1
• Gene: Rfc4 / 288003
• RGDID: 1310142
• Length: 364
• Species: Rattus norvegicus
• Alignment Length: 321
• Identity: 136/321 - (42%)
• Similarity: 194/321 - (60%)
• Gaps: 16/321 - (4%)

  Fly    11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
            :||||||||..:|::...||:::.:.:.:....||:|||||||||||||||||.||:|:.|:.|:
  Rat    38 VPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102

  Fly    76 SMVLELNASDDRGIGIVRGQILNFASTRTIF--------CDTFKLIILDEADAMTNDAQNALRRI 132
            ..||||||||:|||.:||.::.|||.. |:.        |..||::||||||:||:.||.||||.
  Rat   103 LRVLELNASDERGIQVVREKVKNFAQL-TVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRT 166

  Fly   133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALL 197
            :||.:...|||:||||:|:||..|.|||::|||.|||......||..|.|.|.|:|.::....|:
  Rat   167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLV 231

  Fly   198 TLAKGDMRKVLNVLQST--VMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVES 260
            .:::||:||.:..|||.  :.....::||.:....|......||.|:.|..|||.  |..:.|..
  Rat   232 RISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIVTACHSGSF--DKLEAVLK 294

  Fly   261 AKYARGLALEDIITELHLFVMRLELPMSVMNKLIV--KLAQIEERLAKGCTEVAQTAALVA 319
            .....|.|...::.:||..::..| .:|...|.|:  |||::::.||.|..|..|..:|.|
  Rat   295 NLIDEGHAATQLVNQLHDSIIEDE-NLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCA 354

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	136/320 (43%)
Rfc4	NP_001099339.1	rfc	39..354	CDD:234763	135/318 (42%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG53599
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.830