Protein Alignment RfC3 and rfc4

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_593121.1
• Gene: rfc4 / 2542790
• PomBaseID: SPAC1687.03c
• Length: 342
• Species: Schizosaccharomyces pombe
• Alignment Length: 320
• Identity: 125/320 - (39%)
• Similarity: 184/320 - (57%)
• Gaps: 10/320 - (3%)

  Fly     8 AVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQ 72
            |..:||||||||..|||::.:||.|..:........:|||:..|.||.|||::||..|..|..|
pombe    18 AYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP- 81

  Fly    73 QFKSMVLELNASDDRGIGIVRGQILNFASTRTIF-CDTFKLIILDEADAMTNDAQNALRRIIEKY 136
            .:|..||||||||:|||.:||.:|..||..:.|. ....|:|||||||:||..||.||||.:|.|
pombe    82 AYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIY 146

  Fly   137 TDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAK 201
            ::..||.:.||..:|||..:||||...|::.|:..|::.||..|.:||.|..|:||..||:..|:
pombe   147 SNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAE 211

  Fly   202 GDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAKYARG 266
            ||||:.:|.|||||..|..||.:||:.....|....|..:|.|..|| :::.:.:.::.. :..|
pombe   212 GDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLTACQSG-NIDVALEKLQGI-WDLG 274

  Fly   267 LALEDIITELHLFVMRLE-LPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICR 325
            .:..||:|.:...|..:: :|.....:::.::.|....:.:|...:.|.:.||     ||
pombe   275 FSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLV-----CR 329

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	122/310 (39%)
rfc4	NP_593121.1	PLN03025	21..332	CDD:178596	124/317 (39%)
		AAA	36..172	CDD:99707	64/136 (47%)
		Rep_fac_C	259..328	CDD:285713	11/74 (15%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.710