DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC3 and rfc-1

DIOPT Version :10

Sequence 1:NP_609399.1 Gene:RfC3 / 34423 FlyBaseID:FBgn0032244 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001256606.1 Gene:rfc-1 / 179967 WormBaseID:WBGene00004337 Length:839 Species:Caenorhabditis elegans


Alignment Length:258 Identity:65/258 - (25%)
Similarity:104/258 - (40%) Gaps:61/258 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFIS----------------RKQLP-------- 45
            |||...:.||:||:|..:.:|:......|.|.:.:.                :|..|        
 Worm   272 SGPPPALSWVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQD 336

  Fly    46 -----HLLFYGPPGTGKTS-TILACARQLYSPQQFKSMVLELNASDDRG-------IGIVRG--Q 95
                 ..|..|.||.|||: ..:||       ||....::|:||||.|.       ||.:.|  |
 Worm   337 GTSFKAALLSGSPGVGKTTCAYMAC-------QQLGLQLVEMNASDVRSKKHLEAKIGELSGSHQ 394

  Fly    96 ILNFASTRTIFC---DTFK---LIILDEADAMTNDAQNA----LRRIIEKYTDNVRFCVICN-YL 149
            |..|...:.  |   |..|   ::|:||.|.|:.:...|    |.:||::  ..:....||| ..
 Worm   395 IEQFFGAKK--CAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKE--SKIPIICICNDRQ 455

  Fly   150 SKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQ 212
            ...|..|.:.|...||.....:.:..|:..|...|.::|.::....::.|:..|:|:.:..||
 Worm   456 HPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC3NP_609399.1 rfc 12..321 CDD:234763 62/251 (25%)
rfc-1NP_001256606.1 PTZ00121 <4..>245 CDD:173412
PRK04195 277..805 CDD:235250 62/253 (25%)
RFC1 597..750 CDD:462507
Blue background indicates that the domain is not in the aligned region.

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