Protein Alignment RfC3 and rfc-3

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_502517.1
• Gene: rfc-3 / 178259
• WormBaseID: WBGene00004339
• Length: 354
• Species: Caenorhabditis elegans
• Alignment Length: 351
• Identity: 100/351 - (28%)
• Similarity: 160/351 - (45%)
• Gaps: 54/351 - (15%)

  Fly    13 WVEKYRPS---GLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY----- 69
            ||:||||.   |.|.:..|.|..:.: :|:|...:|||||.||.|.||.:.|....|:||
 Worm     4 WVDKYRPKDLLGKDGVDYHIEQANHL-KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELYGVGVE 67

  Fly    70 ----------SPQQFKSMV--------LELNASDDRGIGI-----VRGQILNFASTRTIFCD--- 108
                      ||...|..:        :|:..||   :||     |:..:...|.|..|...
 Worm    68 KTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSD---VGIYDRVVVQDLVKEMAQTSQIESTSQR 129

  Fly   109 TFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQM 173
            :||:::|.|||::|.|||:.|||.:|||.:|.:..:.|..||:||..|||||........:.:.:
 Worm   130 SFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDV 194

  Fly   174 MPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQ-- 236
            ...|.|:||.|:..:.|:..:.::..::|::|:.:.:.::..|.    ||..|...|..|:.:
 Worm   195 TKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRME----NESGVAESVVIPVPEWE 255

  Fly   237 -DIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLE-----LPMSVMNKLIV 295
             .|::..:.:|...| .|....|....|.   .|...|....:|...||     .|..:..:::.
 Worm   256 IYIQETARLILQKQS-SDMLLKVRERLYE---LLSRCIPPTVIFKKLLEHLLPKCPPQIAREVVS 316

  Fly   296 KLAQIEERLAKGCTEVAQTAALVAAF 321
            :.|:.|.||..|...:......||||
 Worm   317 EAAKFEHRLVLGQKAIFHLEGFVAAF 342

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	98/349 (28%)
rfc-3	NP_502517.1	PRK12402	3..342	CDD:237090	98/349 (28%)
		AAA	38..187	CDD:99707	53/151 (35%)
		Rep_fac_C	253..340	CDD:285713	17/90 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820