Protein Alignment RfC3 and rfc-2

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_500069.1
• Gene: rfc-2 / 176946
• WormBaseID: WBGene00004338
• Length: 334
• Species: Caenorhabditis elegans
• Alignment Length: 324
• Identity: 123/324 - (37%)
• Similarity: 185/324 - (57%)
• Gaps: 20/324 - (6%)

  Fly    12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKS 76
            ||||||||..|.|::.:|.|:..:........:|:::..||||.|||:::.|.||:|.. .:.|.
 Worm    11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLG-DKVKE 74

  Fly    77 MVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNV 140
            .||||||||:|||.:||.:|..||.|: |:.....|:|||||||:||:.||.||||.:|.||...
 Worm    75 AVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTT 139

  Fly   141 RFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMR 205
            ||.:.||...|||..:||||...|:..||..|::.|::::.:||.|...:.|..|:|..|:||||
 Worm   140 RFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMR 204

  Fly   206 KVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQIL-----KALLSGSSLEDSFKTVESAKYAR 265
            :.||.||:||.|::.||::||......|....:.::|     :.....|.:...|       :..
 Worm   205 QALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKMLHYCTDRKFFEASKIIHEF-------HRL 262

  Fly   266 GLALEDIITELHLFVMRLELPMSVMNKL----IVKLAQIEERLAKGCTEVAQTAALVAAFFICR 325
            |.:.:||::.|...|..:||..:|..:|    |.::|....|:.:|.|...|.:.|:|.  :||
 Worm   263 GFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIAD--LCR 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	121/318 (38%)
rfc-2	NP_500069.1	PLN03025	11..325	CDD:178596	123/324 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100321
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.720