DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC3 and Rfc4

DIOPT Version :9

Sequence 1:NP_609399.1 Gene:RfC3 / 34423 FlyBaseID:FBgn0032244 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_663455.1 Gene:Rfc4 / 106344 MGIID:2146571 Length:364 Species:Mus musculus


Alignment Length:321 Identity:135/321 - (42%)
Similarity:193/321 - (60%) Gaps:16/321 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
            :||||||||..:|::...:|:::.:.:.:....||:|||||||||||||||||.||:|:.|:.|:
Mouse    38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102

  Fly    76 SMVLELNASDDRGIGIVRGQILNFASTRTIF--------CDTFKLIILDEADAMTNDAQNALRRI 132
            ..||||||||:|||.:||.::.|||.. |:.        |..||::||||||:||:.||.||||.
Mouse   103 LRVLELNASDERGIQVVREKVKNFAQL-TVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRT 166

  Fly   133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALL 197
            :||.:...|||:||||:|:||..|.|||::|||.|||......||..|.|.|.|:|..:....|:
Mouse   167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLV 231

  Fly   198 TLAKGDMRKVLNVLQST--VMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVES 260
            .:::||:||.:..|||.  :.....|:||.:....|......|:.|..|..|||.  |..:.|..
Mouse   232 KISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSF--DKLEAVVK 294

  Fly   261 AKYARGLALEDIITELHLFVMRLELPMSVMNKLIV--KLAQIEERLAKGCTEVAQTAALVA 319
            .....|.|...::.:||..::..| .:|..:|.|:  |||::::.||.|..|..|..:|.|
Mouse   295 NLIDEGHAATQLVNQLHDAIIENE-NLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCA 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC3NP_609399.1 rfc 12..321 CDD:234763 135/320 (42%)
Rfc4NP_663455.1 rfc 39..354 CDD:234763 134/318 (42%)
AAA 55..201 CDD:99707 78/146 (53%)
AAA_assoc_2 217..>267 CDD:292811 14/49 (29%)
Rep_fac_C 285..354 CDD:285713 20/71 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53599
OrthoDB 1 1.010 - - D1071197at2759
OrthoFinder 1 1.000 - - FOG0000505
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.830

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