DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC3 and rfc3

DIOPT Version :9

Sequence 1:NP_609399.1 Gene:RfC3 / 34423 FlyBaseID:FBgn0032244 Length:332 Species:Drosophila melanogaster
Sequence 2:XP_002934079.1 Gene:rfc3 / 100493161 XenbaseID:XB-GENE-984444 Length:356 Species:Xenopus tropicalis


Alignment Length:367 Identity:96/367 - (26%)
Similarity:153/367 - (41%) Gaps:89/367 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY-------- 69
            ||:|||||.|..|..|:|....:...:.....||||.:||.|.||.:.|:...|:||        
 Frog     4 WVDKYRPSSLSKLDYHKEQAVQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYGAGVEKLR 68

  Fly    70 -------SPQQFKSMV--------LELNASD----DRGI------GIVRGQILNFASTRTIFCDT 109
                   :|.:.|..:        ||:|.||    ||.:      .:.:.|.|..::.|     .
 Frog    69 IEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQLETSTQR-----D 128

  Fly   110 FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMM 174
            ||:::|.|.|.:|.|||:||||.:|||....|..:.||..||:|..::|||...|....|.|::.
 Frog   129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCLAVRICAPSVDEIC 193

  Fly   175 PRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG-----YPL 234
            ..|..:.:.|.:.:.::..|.:...:..::||.|                  .||..     ||.
 Frog   194 TVLFSVCKKEGLILPQELARKIAEKSGRNLRKAL------------------LMCEACRVQQYPF 240

  Fly   235 RQD-----------IEQILKALLSGSSLEDSFKTVESAKYARGLALEDIIT-----ELHLFVMRL 283
            ..|           :::...|::|.       :|.:.....|| .|.:::|     |:.:..:..
 Frog   241 SADQDLPETDWEVYVKETANAIVSQ-------QTPQRLLEVRG-RLYELLTHCIPPEIIIKCLLS 297

  Fly   284 ELPMSVMNKLIVKLAQI----EERLAKGCTEVAQTAALVAAF 321
            ||..:...:|...:||:    |.||..|...:....|.||.|
 Frog   298 ELLNNCDGQLKCDVAQMAAYYEHRLQLGSKAIYHLEAFVAKF 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC3NP_609399.1 rfc 12..321 CDD:234763 95/365 (26%)
rfc3XP_002934079.1 PRK12402 3..339 CDD:237090 95/365 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1071197at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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