Protein Alignment RfC3 and rfc2

DIOPT Version :9

• Sequence 1: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Sequence 2: NP_001135488.1
• Gene: rfc2 / 100216026
• XenbaseID: XB-GENE-999114
• Length: 345
• Species: Xenopus tropicalis
• Alignment Length: 306
• Identity: 119/306 - (38%)
• Similarity: 184/306 - (60%)
• Gaps: 4/306 - (1%)

  Fly    11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
            :||||||||..|.:::.:||.:|.:..|.....:|:::..||||||||::||..||.|..| ..|
 Frog    31 LPWVEKYRPLKLSEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP-TMK 94

  Fly    76 SMVLELNASDDRGIGIVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDN 139
            ..|||||||:||||.:||.:|..||..: |:.....|:|||||||:||:.||.||||.:|.|:..
 Frog    95 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKT 159

  Fly   140 VRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDM 204
            .||.:.||...|||..:||||...|:..|:..|::.||..::|.|.||.|:||..|::..|:|||
 Frog   160 TRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMDVVEKERVQCTDDGLEAIVFTAQGDM 224

  Fly   205 RKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLAL 269
            |:.||.||||...|..||..||:.....|....::::|:..:: :::::::|.| :..:..|.:.
 Frog   225 RQALNNLQSTFAGFGFVNSTNVFKVCDEPHPLLVKEMLQHCVN-ANIDEAYKVV-AHLWKLGYSP 287

  Fly   270 EDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTA 315
            ||||..:.......::|..:..:.|.::.....::|:|...:.|.|
 Frog   288 EDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMA 333

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC3	NP_609399.1	rfc	12..321	CDD:234763	119/305 (39%)
rfc2	NP_001135488.1	PLN03025	31..334	CDD:178596	119/306 (39%)
		AAA	46..180	CDD:99707	64/134 (48%)
		AAA_assoc_2	203..>231	CDD:292811	14/27 (52%)
		Rep_fac_C	269..334	CDD:285713	13/66 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0000505
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010