DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and UBQ1

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_566969.1 Gene:UBQ1 / 824425 AraportID:AT3G52590 Length:128 Species:Arabidopsis thaliana


Alignment Length:129 Identity:83/129 - (64%)
Similarity:92/129 - (71%) Gaps:15/129 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:||||||||||||||||||||||||||||||||:||||||||
plant     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65

  Fly    66 TLHLVLRLRGGAKKRKKKNYSTPKKIKHKRK--KVKLAVLKYYKVDENGKIHRLRRECPGENCG 127
            |||||||||||..:        |..:...||  :.|:...|.|     .::|.....|..:.||
plant    66 TLHLVLRLRGGIIE--------PSLMMLARKYNQDKMICRKCY-----ARLHPRAVNCRKKKCG 116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_S27 103..147 CDD:396259 6/25 (24%)
UBQ1NP_566969.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_L40e 79..126 CDD:395807 10/51 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 138 1.000 Domainoid score I1562
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1536766at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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