DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and rad23ab

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_001032776.1 Gene:rad23ab / 562839 ZFINID:ZDB-GENE-051113-160 Length:404 Species:Danio rerio


Alignment Length:92 Identity:26/92 - (28%)
Similarity:53/92 - (57%) Gaps:11/92 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
            :.|.:|||..:|..::::...|::.:|.||::   |:|.|...|:||:|||.|.|...|.:|.|.
Zfish     2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKEYKID 66

  Fly    63 KESTLHLVLRLRGGAKKRKKKNYSTPK 89
            :::.:.:::        .|.|:.::|:
Zfish    67 EKNFVVVMV--------TKPKSAASPQ 85

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 23/77 (30%)
Ribosomal_S27 103..147 CDD:396259
rad23abNP_001032776.1 rad23 2..402 CDD:273167 26/92 (28%)
UBQ 2..79 CDD:294102 24/84 (29%)
PBP_N 56..>133 CDD:293698 7/38 (18%)
UBA1_HR23B 194..239 CDD:270609
XPC-binding 287..340 CDD:286376
UBA2_Rad23 360..398 CDD:270563
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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