DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS27A and faub

DIOPT Version :9

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_001017866.2 Gene:faub / 550564 ZFINID:ZDB-GENE-050417-416 Length:133 Species:Danio rerio


Alignment Length:122 Identity:32/122 - (26%)
Similarity:63/122 - (51%) Gaps:25/122 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
            ||:||:   |::: ::::..|:|:.::||:|:..||:..|.|.:..:|..|||...:....|::.
Zfish     1 MQLFVR---GQSLHSVQLNGSETVAHIKAQIEALEGLACDDQIISLSGIPLEDDALICQSGIEEF 62

  Fly    65 STLHLVLRLRGG---------------------AKKRKKKNYSTPKKIKHKRKKVKL 100
            :||.:..||.||                     .:||||:.....::|::.|:.|.:
Zfish    63 NTLEVSSRLLGGKVHGSLARAGKVRGQTPKVDKQEKRKKRTGRAKRRIQYNRRFVNV 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 23/75 (31%)
Ribosomal_S27 103..147 CDD:396259
faubNP_001017866.2 Fubi 1..74 CDD:176388 23/75 (31%)
UBQ 1..67 CDD:214563 21/68 (31%)
Ribosomal_S30 75..132 CDD:282596 7/45 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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