DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS27A and nedd8

DIOPT Version :10

Sequence 1:NP_476778.1 Gene:RpS27A / 34420 FlyBaseID:FBgn0003942 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_001016973.1 Gene:nedd8 / 549727 XenbaseID:XB-GENE-6067551 Length:77 Species:Xenopus tropicalis


Alignment Length:156 Identity:30/156 - (19%)
Similarity:52/156 - (33%) Gaps:59/156 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ALVSLGLTACSFAFTEHGAIVQSIVQAQHECVTYLNLPKHRLYQYLMYNYSN-----------DA 63
            |:::..:.||   |.:.||.|.:|                  .:|:::.|.:           .|
 Frog   125 AILTEAIKAC---FQKSGASVVAI------------------RKYIIHKYPSLELERRGYLLKQA 168

  Fly    64 KTKQMLRCVGLILQWWKSDGTLNEHVLAQYFMPDTSDSDYYNRTYRCIERKAPVDDD-------- 120
            ..:::.|  |:|.| .|..|.....|:.|........|  .||.    .|.:.||.:        
 Frog   169 LKRELNR--GVIKQ-VKGKGASGSFVVVQKSRKTPQKS--RNRK----NRSSAVDPEPQVKLEDV 224

  Fly   121 -------LC---SRAFETFQCYLQQY 136
                   ||   ..::...:.|:.||
 Frog   225 LPLAFTRLCEPKEASYSLIRKYVSQY 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS27ANP_476778.1 Ubl_ubiquitin 1..76 CDD:340501 13/76 (17%)
Ribosomal_S27 103..147 CDD:460261 10/52 (19%)
nedd8NP_001016973.1 Ubl_NEDD8 3..76 CDD:340504
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.